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中国榕树的完整叶绿体基因组

The complete chloroplast genome of the Chinese banyan tree .

作者信息

Lin Enwen, Liao Zhenyang, Xu Xiuming, Zhang Xingtan, Fang Jingping

机构信息

College of Life Sciences, Fujian Normal University, Fuzhou, China.

Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, China.

出版信息

Mitochondrial DNA B Resour. 2022 Feb 28;7(3):423-425. doi: 10.1080/23802359.2021.1993097. eCollection 2022.

DOI:10.1080/23802359.2021.1993097
PMID:35252575
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8890538/
Abstract

Banyan tree or is a large perennial plant with extraordinary aerial roots from the Moraceae family. In this study, the complete chloroplast genome sequence of was assembled using PacBio data. The chloroplast genome size is 141,611 bp, consisting of a large single-copy (LSC) region and a small single-copy (SSC) region of 101,835 bp and 9,676 bp, respectively, which are separated by a pair of 15,050 bp inverted repeat (IR) regions. The genome includes 74 protein-coding genes, 43 tRNA genes, and 8 rRNA genes. A phylogenetic tree reconstructed by 25 complete chloroplast genomes reveals that is mostly related to

摘要

榕树是一种大型多年生植物,属于桑科,具有非凡的气生根。在本研究中,利用PacBio数据组装了榕树的完整叶绿体基因组序列。叶绿体基因组大小为141,611 bp,由一个101,835 bp的大单拷贝(LSC)区域和一个9,676 bp的小单拷贝(SSC)区域组成,这两个区域被一对15,050 bp的反向重复(IR)区域隔开。该基因组包括74个蛋白质编码基因、43个tRNA基因和8个rRNA基因。由25个完整叶绿体基因组重建的系统发育树表明,榕树与……关系最为密切 (原文此处不完整)

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Cell. 2020 Nov 12;183(4):875-889.e17. doi: 10.1016/j.cell.2020.09.043. Epub 2020 Oct 8.
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GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
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Bioinformatics. 2017 Aug 15;33(16):2583-2585. doi: 10.1093/bioinformatics/btx198.
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Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
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Chloroplast genome of Aconitum barbatum var. puberulum (Ranunculaceae) derived from CCS reads using the PacBio RS platform.基于PacBio RS平台利用CCS reads获得的毛茛科伏毛铁棒锤叶绿体基因组。
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Syst Biol. 2012 Dec 1;61(6):1029-47. doi: 10.1093/sysbio/sys068. Epub 2012 Jul 30.
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Nucleic Acids Res. 1999 Jan 15;27(2):573-80. doi: 10.1093/nar/27.2.573.