Mohd Yusof Norfadzlia, Muda Azah Kamilah, Pratama Satrya Fajri, Abraham Ajith
Fakulti Teknologi Kejuruteraan Elektrik dan Elektronik, Universiti Teknikal Malaysia Melaka, Hang Tuah Jaya, 76100, Durian Tunggal, Melaka, Malaysia.
Fakulti Teknologi Maklumat dan Komunikasi, Universiti Teknikal Malaysia Melaka, Hang Tuah Jaya, 76100, Durian Tunggal, Melaka, Malaysia.
Mol Divers. 2023 Feb;27(1):71-80. doi: 10.1007/s11030-022-10410-y. Epub 2022 Mar 7.
In computational chemistry, the high-dimensional molecular descriptors contribute to the curse of dimensionality issue. Binary whale optimization algorithm (BWOA) is a recently proposed metaheuristic optimization algorithm that has been efficiently applied in feature selection. The main contribution of this paper is a new version of the nonlinear time-varying Sigmoid transfer function to improve the exploitation and exploration activities in the standard whale optimization algorithm (WOA). A new BWOA algorithm, namely BWOA-3, is introduced to solve the descriptors selection problem, which becomes the second contribution. To validate BWOA-3 performance, a high-dimensional drug dataset is employed. The proficiency of the proposed BWOA-3 and the comparative optimization algorithms are measured based on convergence speed, the length of the selected feature subset, and classification performance (accuracy, specificity, sensitivity, and f-measure). In addition, statistical significance tests are also conducted using the Friedman test and Wilcoxon signed-rank test. The comparative optimization algorithms include two BWOA variants, binary bat algorithm (BBA), binary gray wolf algorithm (BGWOA), and binary manta-ray foraging algorithm (BMRFO). As the final contribution, from all experiments, this study has successfully revealed the superiority of BWOA-3 in solving the descriptors selection problem and improving the Amphetamine-type Stimulants (ATS) drug classification performance.
在计算化学中,高维分子描述符会导致维数灾难问题。二进制鲸鱼优化算法(BWOA)是最近提出的一种元启发式优化算法,已被有效地应用于特征选择。本文的主要贡献是提出了一种新版本的非线性时变Sigmoid传递函数,以改善标准鲸鱼优化算法(WOA)中的开发和探索活动。引入了一种新的BWOA算法,即BWOA-3,以解决描述符选择问题,这成为本文的第二个贡献。为了验证BWOA-3的性能,使用了一个高维药物数据集。基于收敛速度、所选特征子集的长度和分类性能(准确率、特异性、敏感性和F值)来衡量所提出的BWOA-3和比较优化算法的性能。此外,还使用Friedman检验和Wilcoxon符号秩检验进行了统计显著性检验。比较优化算法包括两种BWOA变体、二进制蝙蝠算法(BBA)、二进制灰狼算法(BGWOA)和二进制蝠鲼觅食算法(BMRFO)。作为最后的贡献,通过所有实验,本研究成功揭示了BWOA-3在解决描述符选择问题和提高苯丙胺类兴奋剂(ATS)药物分类性能方面的优越性。