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p53 家族 DNA 结合域的进化历史:来自 Alvinella pompejana 同源物的见解。

Evolutionary history of the p53 family DNA-binding domain: insights from an Alvinella pompejana homolog.

机构信息

Department of Neuroscience, Biomedicum, Karolinska Institutet, Stockholm, Sweden.

Institute of Pharmaceutical Chemistry, Goethe University, Max-von-Laue-Str. 9, 60438, Frankfurt am Main, Germany.

出版信息

Cell Death Dis. 2022 Mar 7;13(3):214. doi: 10.1038/s41419-022-04653-8.


DOI:10.1038/s41419-022-04653-8
PMID:35256607
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8901663/
Abstract

The extremophile Alvinella pompejana, an annelid worm living on the edge of hydrothermal vents in the Pacific Ocean, is an excellent model system for studying factors that govern protein stability. Low intrinsic stability is a crucial factor for the susceptibility of the transcription factor p53 to inactivating mutations in human cancer. Understanding its molecular basis may facilitate the design of novel therapeutic strategies targeting mutant p53. By analyzing expressed sequence tag (EST) data, we discovered a p53 family gene in A. pompejana. Protein crystallography and biophysical studies showed that it has a p53/p63-like DNA-binding domain (DBD) that is more thermostable than all vertebrate p53 DBDs tested so far, but not as stable as that of human p63. We also identified features associated with its increased thermostability. In addition, the A. pompejana homolog shares DNA-binding properties with human p53 family DBDs, despite its evolutionary distance, consistent with a potential role in maintaining genome integrity. Through extensive structural and phylogenetic analyses, we could further trace key evolutionary events that shaped the structure, stability, and function of the p53 family DBD over time, leading to a potent but vulnerable tumor suppressor in humans.

摘要

生活在太平洋海底热液喷口边缘的极端嗜热环节虫 Alvinella pompejana 是研究控制蛋白质稳定性因素的理想模型系统。内在稳定性低是人类癌症中转录因子 p53 易发生失活突变的关键因素。了解其分子基础可能有助于设计针对突变 p53 的新型治疗策略。通过分析表达序列标签 (EST) 数据,我们在 A. pompejana 中发现了一个 p53 家族基因。蛋白质晶体学和生物物理研究表明,它具有 p53/p63 样 DNA 结合域 (DBD),比迄今为止测试的所有脊椎动物 p53 DBD 都更耐热,但不如人类 p63 稳定。我们还确定了与它的耐热性增加相关的特征。此外,尽管进化距离较远,但 A. pompejana 同源物与人类 p53 家族 DBD 具有 DNA 结合特性,这与其在维持基因组完整性方面的潜在作用一致。通过广泛的结构和系统发育分析,我们可以进一步追溯塑造 p53 家族 DBD 结构、稳定性和功能的关键进化事件,导致人类中出现一种强大但脆弱的肿瘤抑制因子。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/bfafabfc57e0/41419_2022_4653_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/7323c6050fc0/41419_2022_4653_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/f3cd72973875/41419_2022_4653_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/2bd62b0db258/41419_2022_4653_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/e4da7e2c3b15/41419_2022_4653_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/435cec5843d5/41419_2022_4653_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/083b15dd1d00/41419_2022_4653_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/bfafabfc57e0/41419_2022_4653_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/7323c6050fc0/41419_2022_4653_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/f3cd72973875/41419_2022_4653_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/2bd62b0db258/41419_2022_4653_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/e4da7e2c3b15/41419_2022_4653_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/435cec5843d5/41419_2022_4653_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/083b15dd1d00/41419_2022_4653_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/071f/8901663/bfafabfc57e0/41419_2022_4653_Fig7_HTML.jpg

相似文献

[1]
Evolutionary history of the p53 family DNA-binding domain: insights from an Alvinella pompejana homolog.

Cell Death Dis. 2022-3-7

[2]
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[3]
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[5]
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[6]
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[10]
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引用本文的文献

[1]
Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments.

BMC Biol. 2025-9-2

[2]
Mechanistic Insights of a p53-Targeting Small Molecule.

ACS Pharmacol Transl Sci. 2025-5-7

[3]
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Cell Death Differ. 2025-2

[4]
Thermal stress, p53 structures and learning from elephants.

Cell Death Discov. 2024-8-7

[5]
Structural basis of p53 inactivation by cavity-creating cancer mutations and its implications for the development of mutant p53 reactivators.

Cell Death Dis. 2024-6-11

[6]
Conservation of Affinity Rather Than Sequence Underlies a Dynamic Evolution of the Motif-Mediated p53/MDM2 Interaction in Ray-Finned Fishes.

Mol Biol Evol. 2024-2-1

[7]
Pharmacological reactivation of p53 in the era of precision anticancer medicine.

Nat Rev Clin Oncol. 2024-2

[8]
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J Head Trauma Rehabil.

[9]
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[10]
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本文引用的文献

[1]
Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ).

Nat Commun. 2021-12-3

[2]
Arsenic Trioxide Rescues Structural p53 Mutations through a Cryptic Allosteric Site.

Cancer Cell. 2021-2-8

[3]
Zinc shapes the folding landscape of p53 and establishes a pathway for reactivating structurally diverse cancer mutants.

Elife. 2020-12-2

[4]
Targeting Cavity-Creating p53 Cancer Mutations with Small-Molecule Stabilizers: the Y220X Paradigm.

ACS Chem Biol. 2020-3-20

[5]
The 26S Proteasome Utilizes a Kinetic Gateway to Prioritize Substrate Degradation.

Cell. 2019-3-28

[6]
APR-246 reactivates mutant p53 by targeting cysteines 124 and 277.

Cell Death Dis. 2018-5-1

[7]
Targeting mutant p53 for efficient cancer therapy.

Nat Rev Cancer. 2017-12-15

[8]
Evolution of the p53-MDM2 pathway.

BMC Evol Biol. 2017-8-3

[9]
Proteome Evolution of Deep-Sea Hydrothermal Vent Alvinellid Polychaetes Supports the Ancestry of Thermophily and Subsequent Adaptation to Cold in Some Lineages.

Genome Biol Evol. 2017-2-1

[10]
Anatomy of Mdm2 and Mdm4 in evolution.

J Mol Cell Biol. 2017-2-1

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