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东北大西洋嵌合叶片的生物地理种群结构揭示了南方丰富的基因库、基因渗入和隐秘可塑性。

Biogeographic Population Structure of Chimeric Blades of in the Northeast Atlantic Reveals Southern Rich Gene Pools, Introgression and Cryptic Plasticity.

作者信息

Varela-Álvarez Elena, Meirmans Patrick G, Guiry Michael D, Serrão Ester A

机构信息

CCMAR Centro de Ciências do Mar, CIMAR, Universidade do Algarve, Faro, Portugal.

Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands.

出版信息

Front Plant Sci. 2022 Feb 24;13:818368. doi: 10.3389/fpls.2022.818368. eCollection 2022.

Abstract

The genus (Bangiaceae, Rhodophyta), an important seaweed grown in aquaculture, is the most genetically diverse group of the Class Bangiophyceae, but has poorly understood genetic variability linked to complex evolutionary processes. Genetic studies in the last decades have largely focused on resolving gene phylogenies; however, there is little information on historical population biogeography, structure and gene flow in the Bangiaceae, probably due to their cryptic nature, chimerism and polyploidy, which render analyses challenging. This study aims to understand biogeographic population structure in the two abundant species in the Northeast Atlantic: (a dioecious annual) and (protandrous hermaphroditic winter annual), occupying distinct niches (seasonality and position on the shore). Here, we present a large-scale biogeographic genetic analysis across their distribution in the Northeast Atlantic, using 10 microsatellites and cpDNA as genetic markers and integrating chimerism and polyploidy, including simulations considering alleles derived from different ploidy levels and/or from different genotypes within the chimeric blade. For , both markers revealed strong genetic differentiation of north-central eastern Atlantic populations (from Iceland to the Basque region of Northeast Iberia) vs. southern populations (Galicia in Northwest Iberia, and Portugal), with higher genetic diversity in the south vs. a northern homogenous low diversity. For. , microsatellite analyses also revealed two genetic regions, but with weaker differentiation, and cpDNA revealed little structure with all the haplotypes mixed across its distribution. The southern cluster in also included introgressed individuals with cpDNA from and a winter form of occurred spatially intermixed with . This third entity had a similar morphology and seasonality as but genomes (either nuclear or chloroplast) from . We hypothesize a northward colonization from southern Europe (where the ancestral populations reside and host most of the gene pool of these species). In recently established populations colonized the north resulting in homogeneous low diversity, whereas for the signature of this colonization is not as obvious due to hypothetical higher gene flow among populations, possibly linked to its reproductive biology and annual life history.

摘要

紫菜属(红藻门,红毛菜科)是水产养殖中一种重要的海藻,是红毛菜纲中遗传多样性最为丰富的类群,但与复杂进化过程相关的遗传变异性却鲜为人知。过去几十年的遗传学研究主要集中在解析基因系统发育;然而,关于红毛菜科的历史种群生物地理学、结构和基因流的信息却很少,这可能是由于它们的隐蔽性、嵌合现象和多倍体现象,使得分析具有挑战性。本研究旨在了解东北大西洋两种常见紫菜属物种的生物地理种群结构:条斑紫菜(一种雌雄异株的一年生海藻)和皱紫菜(雄性先熟的雌雄同体冬季一年生海藻),它们占据着不同的生态位(季节性和在海岸上的位置)。在此,我们利用10个微卫星和叶绿体DNA作为遗传标记,并综合考虑嵌合现象和多倍体现象,包括模拟来自不同倍性水平和/或嵌合叶片内不同基因型的等位基因,对它们在东北大西洋的分布进行了大规模的生物地理遗传分析。对于条斑紫菜,两种标记均显示出大西洋东北部中东部种群(从冰岛到伊比利亚半岛东北部的巴斯克地区)与南部种群(伊比利亚半岛西北部的加利西亚和葡萄牙)之间存在强烈的遗传分化,南部的遗传多样性高于北部单一的低多样性。对于皱紫菜,微卫星分析也揭示了两个遗传区域,但分化较弱,叶绿体DNA分析显示几乎没有结构,所有单倍型在其分布范围内混合。条斑紫菜的南部聚类还包括来自皱紫菜的叶绿体DNA渗入个体以及皱紫菜的一种冬季形态,它们在空间上相互混杂。这第三个实体具有与皱紫菜相似的形态和季节性,但基因组(核基因组或叶绿体基因组)来自条斑紫菜。我们推测其从南欧向北扩散(南欧是这些物种祖先种群的所在地,拥有这些物种的大部分基因库)。在条斑紫菜中,最近建立的种群向北扩散,导致单一的低多样性,而对于皱紫菜,这种扩散的特征并不明显,这可能是由于种群间假设的更高基因流,可能与其繁殖生物学和一年生生活史有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8cda/8908385/608237b5e4a9/fpls-13-818368-g001.jpg

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