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对一株新型的矢车菊微杆菌(Microbacterium camelliasinensis CIAB417)进行基因组测序,鉴定出了潜在的甘露聚糖水解酶。

Genome sequencing of a novel Microbacterium camelliasinensis CIAB417 identified potential mannan hydrolysing enzymes.

机构信息

Center of Innovative and Applied Bioprocessing (CIAB), Knowledge City, Sector-81, Mohali 140306, India.

Center of Innovative and Applied Bioprocessing (CIAB), Knowledge City, Sector-81, Mohali 140306, India.

出版信息

Int J Biol Macromol. 2022 May 31;208:219-229. doi: 10.1016/j.ijbiomac.2022.03.093. Epub 2022 Mar 21.

Abstract

Here, whole genome sequencing of Microbacterium sp. CIAB417 was conducted to determine its novelty at species level and identification of genes encoding for enzymes for mannan degradation. The draft genome was predicted to have 6.53 mbp length represented by 41 contigs and 6078 genes. However, only 82.35% genes were allocated for their functions. The whole genome phylogeny, ANI score (78.84%), GGDC (genome to genome distance calculations) show probability (DDH ≥ 70%) equal to 0% and difference in advanced biochemical properties among closely predicted species. The Microbacterium sp. CIAB417 was stipulated to be novel at species level. Isolate was named as Microbacterium camelliasinensis CIAB417 (accession no JAHZUT000000000) based on its isolation from a tea garden soil. Genome was predicted for three novel mannanase coding genes man1 (MZ702740), man2 (MZ702741), and man3 (MZ702737) that belong to the GH5 and GH113 family. Besides that, mannan side chain hydrolysing enzymes alpha-galactosidase (gla1; MZ702739) and beta-glucosidase (glu1; MZ702738) were also predicted.

摘要

这里,对 Microbacterium sp. CIAB417 进行全基因组测序,以确定其在种水平上的新颖性,并鉴定编码甘露聚糖降解酶的基因。预测该草图基因组长度为 6.53 Mbp,由 41 个连续序列和 6078 个基因组成。然而,只有 82.35%的基因被分配到它们的功能上。全基因组系统发育、ANI 得分(78.84%)、GGDC(基因组到基因组距离计算)显示全基因组距离计算(DDH≥70%)的概率为 0%,并且与预测的近缘种之间的先进生化特性存在差异。因此,Microbacterium sp. CIAB417 被规定为种水平上的新种。该分离物被命名为茶黄单胞菌 CIAB417(登录号 JAHZUT000000000),基于其从茶园土壤中的分离。预测基因组中存在三个新的甘露聚糖酶编码基因 man1(MZ702740)、man2(MZ702741)和 man3(MZ702737),它们属于 GH5 和 GH113 家族。此外,还预测了甘露聚糖侧链水解酶 alpha-半乳糖苷酶(gla1;MZ702739)和 beta-葡萄糖苷酶(glu1;MZ702738)。

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