Yu Sheng-Yang, Zheng Wei-Shuang, Huang Yi
Marine Institute for Bioresources and Environment, Peking University Shenzhen Institute, Shenzhen 518057, PR China.
PKU-HKUST ShenZhen-Hong Kong Institution, Shenzhen 518057, PR China.
Int J Syst Evol Microbiol. 2022 Mar;72(3). doi: 10.1099/ijsem.0.005303.
A Gram-negative, obligate aerobic, non-motile, rod-shaped bacterium lacking a flagellum, was isolated from sediment sampled at the Dapeng peninsula of Shenzhen, Guangdong, China, and designated strain DP4N28-5. Growth of strain DP4N28-5 occurred at 15-45 °C (optimum at 30 °C), pH 6.0-8.0 (optimum at 6.0) and in 2.0-10.0 % NaCl (w/v; optimum at 2.0-3.0 %). The 16S rRNA gene sequence analysis revealed that strain DP4N28-5 was most closely related to DSM 100037 (97.6 %; sequence similarity). The strain synthesized a trace amount of poly--hydroxybutyrate. The dominant cellular fatty acids were summed feature 8 (C 6 and/or C 7), C, 11-mehtyl C c and C 2-OH. The major polar lipids included phosphatidylethanolamine, phosphatidylglycerol, phosphatidylmethylethanolamine, one unidentified aminophospholipid, three unidentified aminolipids and four unidentified lipids. The respiratory quinone was Q-10. The DNA G+C content was 62.0 mol% and the estimated genome size was 3.9 Mbp. The calculated average nucleotide value between strain DP4N28-5 and DSM 100037 was 78.1 %. The phenotypic, genotypic and chemotaxonomic differences between strain DP4N28-5 and its phylogenetic relatives indicate that DP4N28-5 represents a novel species in the genus , for which the name sp. nov. is proposed. The type strain is DP4N28-5 (=MCCC 1K05640=KCTC 82805). The description of genus was emended to include this new species.
从中国广东深圳大鹏半岛采集的沉积物中分离出一种革兰氏阴性、专性需氧、无运动性、无鞭毛的杆状细菌,命名为DP4N28 - 5菌株。DP4N28 - 5菌株在15 - 45°C(最适温度为30°C)、pH 6.0 - 8.0(最适pH为6.0)和2.0 - 10.0%(w/v;最适浓度为2.0 - 3.0%)NaCl条件下生长。16S rRNA基因序列分析表明,DP4N28 - 5菌株与DSM 100037菌株关系最为密切(序列相似性为97.6%)。该菌株合成微量的聚-β-羟基丁酸。主要的细胞脂肪酸为总和特征8(C₆和/或C₇)、C、11-甲基C₉和C₁₂-OH。主要极性脂包括磷脂酰乙醇胺、磷脂酰甘油、磷脂酰甲基乙醇胺、一种未鉴定的氨基磷脂、三种未鉴定的氨基脂和四种未鉴定的脂类。呼吸醌为Q-10。DNA G+C含量为62.0 mol%,估计基因组大小为3.9 Mbp。计算得出DP4N28 - 5菌株与DSM 100037菌株之间的平均核苷酸同源性值为78.1%。DP4N28 - 5菌株与其系统发育亲缘关系之间的表型、基因型和化学分类学差异表明,DP4N28 - 5代表了该属中的一个新物种,为此提出新物种名称 新种。模式菌株为DP4N28 - 5(=MCCC 1K05640=KCTC 82805)。对 属的描述进行了修订,以纳入这个新物种。