Marine Institute for Bioresources and Environment, Peking University Shenzhen Institute, Shenzhen, 518057, PR China.
PKU-HKUST Shenzhen-Hong Kong Institution, Shenzhen, 518057, PR China.
Int J Syst Evol Microbiol. 2024 Sep;74(9). doi: 10.1099/ijsem.0.006453.
A Gram-stain-negative, strictly aerobic, motile, flagellated, rod-shaped, halotolerant, and poly--hydroxyalkanoate-producing bacterium, designated DP4N28-3, was isolated from offshore sediment surrounding hard coral in the Dapeng peninsula (Guangdong, PR China). Growth occurred at 15-35 °C (optimal at 30 °C), pH 6.0-9.5 (optimal at 6.0-7.0), and 0.0-30.0 % NaCl concentration (w/v, optimal at 0.0-2.0 %), showing halotolerance. Phylogeny based on 16S rRNA gene sequences, five housekeeping genes, and genome sequences identified DSM 23348 (98.1 %, 16S rRNA gene sequence similarity) as the most related species to strain DP4N28-3. Average nucleotide identity, digital DNA-DNA hybridization, and average amino acid identity values between strain DP4N28-3 and DSM 23348 were all below the threshold of species demarcation. Major phenotypic differences were the flagella type and the limited sources of single carbon utilization by strain DP4N28-3, which only included acetic acid, acetoacetic acid, d-glucuronic acid, and glucuronamide. Strain DP4N28-3 harboured the class I poly--hydroxyalkanoate synthase gene () and produced poly--hydroxybutyrate. The fatty acids were summed feature 8 (C 6 and/or C 7, 49.4 %) and C (13.4 %). The major cellular polar lipids consisted of phosphatidylcholine, phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylglycerol, and sulfoquinovosyl diacylglycerol. The respiratory quinone was Q-10. The results of the phylogenetic, genomic, phenotypic, and chemotaxonomic analysis indicated that the isolated strain represents the type strain of a novel species. Based on these results, strain DP4N28-3 (=MCCC 1K05639=KCTC 82803) is proposed as the type strain of the novel species sp. nov.
一株革兰氏阴性、严格需氧、运动、鞭毛、杆状、耐盐、产多聚-羟基烷酸的细菌,被命名为 DP4N28-3,从大鹏半岛(中国广东)近海硬珊瑚周围的沉积物中分离得到。该菌在 15-35°C(最佳 30°C)、pH 值 6.0-9.5(最佳 6.0-7.0)和 0.0-30.0%NaCl 浓度(w/v,最佳 0.0-2.0%)下生长,表现出耐盐性。基于 16S rRNA 基因序列、五个看家基因和基因组序列的系统发育分析,将 DP4N28-3 鉴定为与菌株 DP4N28-3 最相关的种是 DSM 23348(98.1%,16S rRNA 基因序列相似性)。菌株 DP4N28-3 与 DSM 23348 之间的平均核苷酸同一性、数字 DNA-DNA 杂交和平均氨基酸同一性值均低于种的划分阈值。主要表型差异在于菌株 DP4N28-3 的鞭毛类型和利用单碳源的有限来源,其仅包括乙酸、乙酰乙酸、d-葡萄糖醛酸和葡糖酰胺。菌株 DP4N28-3 携带 I 类多-羟基烷酸合酶基因()并产生多-羟基丁酸酯。脂肪酸为总和特征 8(C 6 和/或 C 7,49.4%)和 C(13.4%)。主要的细胞极性脂由磷脂酰胆碱、磷脂酰乙醇胺、磷脂单甲基乙醇胺、磷脂酰甘油和磺基奎诺糖二酸甘油酯组成。呼吸醌为 Q-10。系统发育、基因组、表型和化学分类分析的结果表明,分离的菌株代表了一个新种的模式株。基于这些结果,菌株 DP4N28-3(=MCCC 1K05639=KCTC 82803)被提议为新型物种的模式株。