Research Institute for Interdisciplinary Science, Okayama University, Okayama 700-8530, Japan.
Tokyo Institute of Technology, Earth-Life Science Institute (ELSI), Tokyo 152-8551, Japan.
Sci Adv. 2022 Mar 25;8(12):eabm2225. doi: 10.1126/sciadv.abm2225.
Tubulins are critical for the internal organization of eukaryotic cells, and understanding their emergence is an important question in eukaryogenesis. Asgard archaea are the closest known prokaryotic relatives to eukaryotes. Here, we elucidated the apo and nucleotide-bound x-ray structures of an Asgard tubulin from hydrothermal living Odinarchaeota (OdinTubulin). The guanosine 5'-triphosphate (GTP)-bound structure resembles a microtubule protofilament, with GTP bound between subunits, coordinating the "+" end subunit through a network of water molecules and unexpectedly by two cations. A water molecule is located suitable for GTP hydrolysis. Time course crystallography and electron microscopy revealed conformational changes on GTP hydrolysis. OdinTubulin forms tubules at high temperatures, with short curved protofilaments coiling around the tubule circumference, more similar to FtsZ, rather than running parallel to its length, as in microtubules. Thus, OdinTubulin represents an evolutionary stage intermediate between prokaryotic FtsZ and eukaryotic microtubule-forming tubulins.
微管蛋白对于真核细胞的内部组织至关重要,理解其起源是真核生物起源的一个重要问题。Asgard 古菌是已知与真核生物最接近的原核生物亲属。在这里,我们阐明了来自热液生 Odinarchaeota(OdinTubulin)的无配体和核苷酸结合的 X 射线结构。鸟苷 5'-三磷酸(GTP)结合结构类似于微管原丝,GTP 结合在亚基之间,通过水分子网络和两个出乎意料的阳离子协调“+”端亚基。一个水分子位于适合 GTP 水解的位置。时程结晶学和电子显微镜揭示了 GTP 水解的构象变化。OdinTubulin 在高温下形成小管,短的弯曲原丝围绕小管的圆周卷曲,与 FtsZ 更相似,而不是与微管中的长度平行。因此,OdinTubulin 代表了介于原核 FtsZ 和真核微管形成微管蛋白之间的进化阶段。