Center for Environmental Science in Saitama, 914 Kamitanadare, Kazo, Saitama 347-0115, Japan.
Ibaraki Kasumigaura Environmental Science Center, 1853 Okijyuku-machi, Tsuchiura, Ibaraki 300-0023, Japan.
Int J Syst Evol Microbiol. 2022 Mar;72(3). doi: 10.1099/ijsem.0.005307.
Three aerobic, Gram-stain-negative, non-motile, rod-shaped bacteria, designated as strains SHINM13, GENT5 and GENT11 were isolated from surface river water (Saitama Prefecture, Japan). SHINM13 and GENT11 were positive for catalase, whereas GENT5 was negative. Phylogenetic analyses based on the 16S rRNA gene (1341 bp) or 40 marker gene (34,513 bp) sequences revealed that the strains formed distinct phylogenetic lineages within the genus . The three strains shared 99.3-99.6 % 16S rRNA gene sequence similarity among each other. The average nucleotide identity by orthology (OrthoANI) and digital DNA-DNA hybridization (dDDH) values between strains SHINM13 and GENT11 were 96.56 and 82.1 %, respectively, and those between SHINM13 and GENT5 were 83.46 % and 52.9 %, respectively. The major cellular fatty acids were Cω6, iso-C, iso-CG, anteiso-C and iso-C 3-OH. The major polar lipid was phosphatidylethanolamine. SHINM13 and GENT5 contained menaquinone-6 (MK-6) as the predominant respiratory quinone, and their DNA G+C contents were 34.4 and 35.1 mol%, respectively. Genome sequencing of the three isolates revealed a genome size of 2.26-2.40 Mbp. Furthermore, all three isolates converted dissolved organic nitrogen to ammonium during cell growth. On the basis of the results of phenotypic and phylogenetic analyses, strains SHINM13 and GENT11 and GENT5 represent two distinct novel species in the genus , for which the names sp. nov. (type strain SHINM13 =JCM 34684 =NCIMB 15379) and sp. nov. (type strain GENT5 =JCM 32249=NCIMB 15380) are proposed.
三株好氧、革兰氏阴性、无动力、杆状细菌,分别命名为 SHINM13 株、GENT5 株和 GENT11 株,从地表水(日本埼玉县)中分离得到。SHINM13 株和 GENT11 株过氧化氢酶阳性,而 GENT5 株阴性。基于 16S rRNA 基因(1341bp)或 40 个标记基因(34513bp)序列的系统发育分析表明,这些菌株在属内形成了独特的进化枝。三株菌彼此之间的 16S rRNA 基因序列相似性为 99.3-99.6%。SHINM13 株和 GENT11 株之间的平均核苷酸同源性(OrthoANI)和数字 DNA-DNA 杂交(dDDH)值分别为 96.56%和 82.1%,SHINM13 株和 GENT5 株之间的分别为 83.46%和 52.9%。主要细胞脂肪酸为 Cω6、iso-C、iso-CG、anteiso-C 和 iso-C 3-OH。主要极性脂为磷脂酰乙醇胺。SHINM13 株和 GENT5 株含有menaquinone-6(MK-6)作为主要呼吸醌,其 DNA G+C 含量分别为 34.4 和 35.1mol%。三株菌的基因组测序显示其基因组大小为 2.26-2.40 Mbp。此外,所有三株菌在细胞生长过程中均将溶解有机氮转化为铵。基于表型和系统发育分析的结果,SHINM13 株和 GENT11 株和 GENT5 株代表属内的两个新的独特种,分别命名为 sp. nov.(模式株 SHINM13=JCM 34684=NCIMB 15379)和 sp. nov.(模式株 GENT5=JCM 32249=NCIMB 15380)。