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sp. nov., sp. nov., 和 sp. nov., 从北极土壤中分离到的新型嗜冷细菌。

sp. nov., sp. nov., and sp. nov., novel psychrophilic bacteria isolated from Arctic soil.

机构信息

Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon, Gyeonggi-Do 16227, Republic of Korea.

Department of Biological Science, College of Science and Engineering, Sangji University, Wonju, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2020 Apr;70(4):2269-2280. doi: 10.1099/ijsem.0.004031. Epub 2020 Feb 6.

Abstract

This study presents taxonomic description of strains LB-D12, AT-3-2, AT-3-7, and TSA-D2 isolated from Arctic soil. All strains were psychrophilic, Gram-stain-negative, aerobic, non-motile, and rod-shaped. Phylogenetic analysis showed that these strains belonged to the genus . Strains LB-D12, AT-3-2 and AT-3-7 were closest to LMG 22018 (98.5-98.8% sequence similarity). Strain TSA-D2 was closest to DSM 15718 (98.3 % sequence similarity). These strains shared common chemotaxonomic features comprising MK-6 as a sole quinone, phosphatidylethanolamine as the principal polar lipid, and summed feature 3 (iso-C 2-OH and/or Cω7), iso-C 3-OH, Cω6, iso-C, and anteiso-C as the main fatty acids. The ANI and dDDH values between these novel isolates and their closest relatives were below the cut-off values of 95 and 70 %, respectively used for species demarcation. The DNA G+C content of all strains ranged from 34.2 to 34.6 mol%. The obtained polyphasic taxonomic data suggested that the isolated strains represent novel species within the genus , for which the names sp. nov. (type strain LB-D12=KEMB 9005-737=KACC 21180=NBRC 113784), sp. nov. (type strain AT-3-2=KEMB 9005-738=KACC 21176=NBRC 113785), and sp. nov. (type strain TSA-D2=KEMB 9005-741=KACC 21179=NBRC 113788) are proposed.

摘要

本研究对从北极土壤中分离得到的 LB-D12、AT-3-2、AT-3-7 和 TSA-D2 菌株进行了分类描述。所有菌株均为嗜冷、革兰氏阴性、需氧、非运动和杆状。系统发育分析表明,这些菌株属于 属。LB-D12、AT-3-2 和 AT-3-7 菌株与 LMG 22018 最为接近(序列相似度为 98.5-98.8%)。TSA-D2 菌株与 DSM 15718 最为接近(序列相似度为 98.3%)。这些菌株具有共同的化学分类特征,包括 MK-6 作为唯一的醌,磷脂酰乙醇胺作为主要的极性脂,以及总和特征 3(iso-C 2-OH 和/或 Cω7)、iso-C 3-OH、Cω6、iso-C 和 anteiso-C 作为主要脂肪酸。这些新分离株与其最接近亲缘株之间的 ANI 和 dDDH 值均低于用于物种划分的 95%和 70%的界限值。所有菌株的 DNA G+C 含量范围为 34.2-34.6 mol%。获得的多相分类数据表明,分离株代表了 属中的新种,它们的名称分别为 sp. nov.(模式菌株 LB-D12=KEMB 9005-737=KACC 21180=NBRC 113784)、 sp. nov.(模式菌株 AT-3-2=KEMB 9005-738=KACC 21176=NBRC 113785)和 sp. nov.(模式菌株 TSA-D2=KEMB 9005-741=KACC 21179=NBRC 113788)。

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