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新型双腙:合成、X射线晶体结构、密度泛函理论计算、构象研究及对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)抑制活性的研究

New bis hydrazone: Synthesis, X-ray crystal structure, DFT computations, conformational study and study of the inhibition activity of SARS-CoV-2.

作者信息

Tabbiche Abdelkader, Bouchama Abdelaziz, Chafai Nadjib, Zaidi Farouk, Chiter Chaabane, Yahiaoui Messaoud, Abiza Abdellah

机构信息

Laboratoire de Chimie, Ingénierie Moléculaire et Nanostructures, Université Ferhat Abbas Sétif 1, Sétif 19000, Algeria.

Département de chimie, Faculté des sciences, Université Ferhat Abbas-Sétif-1, Algeria.

出版信息

J Mol Struct. 2022 Aug 5;1261:132865. doi: 10.1016/j.molstruc.2022.132865. Epub 2022 Mar 20.

Abstract

The aim of this work was to synthesize new bis hydrazone derived from benzil in good yield, namely: (1Z,2Z)-1,2-bis (3-Chlorophenyl Hydrazino) Benzil, encoded by 3-Cl BHB. The benzil (or 1,2-diphenyl ethanedione) reacts with 3-Cl phenyl hydrazine by reflux method using ethanol as solvent to obtain the target compound. The obtained product is depicted by UV-Vis, IR spectroscopy and XRD-crystals analysis. All various contacts intra and intermolecular found in 3-Cl BHB were determined by the X-ray diffraction technique performed on single crystals. On the other hand, the optimized geometric structure of 3-Cl BHB was computed by the DFT/B3LYP method with 6-31 G (d, p) level. So, the bond lengths and angles, frontier molecular orbitals (FMO), surface electrostatic potential of the molecule (MEP), global reactivity descriptors, Mulliken atomic charges, computed vibrational analysis and electronic absorption spectrum were determined to get a good understanding of the electronic properties and the active sites of 3-Cl BHB, then to compare them with experimental data. Additionally, a conformational study was carried out using the same method (DFT). The structure-activity relationships established through molecular docking studies showed that 3-Cl BHB structure strongly binds to the receptors M (-8.90 Kcal/mol) and RdRp (-8.60 Kcal/mol) which confirm its inhibition activity against COVID-19.

摘要

这项工作的目的是高产率地合成一种新的源自联苯甲酰的双腙,即:(1Z,2Z)-1,2-双(3-氯苯基肼基)联苯甲酰,编码为3-Cl BHB。联苯甲酰(或1,2-二苯基乙二酮)与3-氯苯肼在乙醇作为溶剂的条件下通过回流法反应以获得目标化合物。所得到的产物通过紫外可见光谱、红外光谱和X射线晶体分析进行表征。3-Cl BHB中所有分子内和分子间的各种接触都是通过对单晶进行X射线衍射技术测定的。另一方面,3-Cl BHB的优化几何结构通过DFT/B3LYP方法在6-31G(d,p)水平上进行计算。因此,确定了键长和键角、前线分子轨道(FMO)、分子表面静电势(MEP)、全局反应性描述符、 Mulliken原子电荷、计算振动分析和电子吸收光谱,以便更好地理解3-Cl BHB的电子性质和活性位点,然后将它们与实验数据进行比较。此外,使用相同方法(DFT)进行了构象研究。通过分子对接研究建立的构效关系表明,3-Cl BHB结构与受体M(-8.90千卡/摩尔)和RdRp(-8.60千卡/摩尔)强烈结合,这证实了其对COVID-19的抑制活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7d1/8934244/89d2098c3799/ga1_lrg.jpg

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