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基于生物信息学预测与验证的FBLN5对颈动脉粥样硬化不稳定斑块中mir128和mir532-3p的作用

Contribution of FBLN5 to Unstable Plaques in Carotid Atherosclerosis mir128 and mir532-3p Based on Bioinformatics Prediction and Validation.

作者信息

Zheng Lin, Yue Xinyang, Li Minhui, Hu Jie, Zhang Bojin, Zhang Ruijing, Zheng Guoping, Chen Ruihan, Dong Honglin

机构信息

Department of Vascular Surgery, The Second Hospital of Shanxi Medical University, Taiyuan, China.

Department of Nephrology, The Second Hospital of Shanxi Medical University, Taiyuan, China.

出版信息

Front Genet. 2022 Mar 9;13:821650. doi: 10.3389/fgene.2022.821650. eCollection 2022.

Abstract

FBLN5, a member of the short fibulins in the fibulin family of extracellular matrix/matricellular proteins, is involved in interactions with components of the basement membrane and extracellular matrix proteins. It plays key roles in endothelial tissues in many vascular diseases. In this study, the relationship between FBLN5 and carotid atherosclerotic plaque stability as well as the regulatory roles of miRNAs were evaluated. Differential gene expression analyses and weighted gene co-expression network analysis (WGCNA) based on the GSE163154 dataset (including 16 samples without intraplaque hemorrhage and 27 samples with intraplaque hemorrhage) in GEO revealed that FBLN5 is related to plaque stability and is the most significantly differentially expressed gene. LASSO regression was used to evaluate genes obtained from the intersection of differentially expressed genes and clinically significant modules identified by WGCNA. A prediction model based on eight genes, including was constructed and showed an accuracy of 0.951 based on an ROC analysis. Low FBLN5 expression in plaque tissues was confirmed by immunohistochemistry and western blotting. GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) enrichment analyses showed that FBLN5 acted mainly by the maintenance of the cellular matrix and reactive oxygen species production. miRNAs upstream of these eight predictive genes, including , were identified and used to construct a network diagram. These results revealed that hsa-mir-128 and hsa-mir-532-3p were upstream regulatory factors of FBLN5, as verified by PCR assays of human plaque tissues demonstrating that both miRNAs were significantly up-regulated. Therefore, FBLN5 may play an important role in carotid atherosclerosis hsa-mir-128 and hsa-mir-532-3p as well as become an essential target for treatment.

摘要

FBLN5是细胞外基质/基质细胞蛋白的纤维连接蛋白家族中短纤维连接蛋白的成员,参与与基底膜成分和细胞外基质蛋白的相互作用。它在许多血管疾病的内皮组织中起关键作用。在本研究中,评估了FBLN5与颈动脉粥样硬化斑块稳定性之间的关系以及miRNA的调控作用。基于GEO中GSE163154数据集(包括16个无斑块内出血的样本和27个有斑块内出血的样本)进行差异基因表达分析和加权基因共表达网络分析(WGCNA),结果显示FBLN5与斑块稳定性相关,是差异表达最显著的基因。使用LASSO回归评估从差异表达基因与WGCNA鉴定的临床显著模块的交集获得的基因。构建了一个基于八个基因的预测模型,包括[此处原文缺失具体基因名称],基于ROC分析显示准确率为0.951。通过免疫组织化学和蛋白质印迹证实了斑块组织中FBLN5的低表达。基因本体论(GO)和京都基因与基因组百科全书(KEGG)富集分析表明,FBLN5主要通过维持细胞基质和产生活性氧发挥作用。鉴定了这八个预测基因上游的miRNA,包括[此处原文缺失具体基因名称],并用于构建网络图。这些结果表明,经人斑块组织的PCR检测验证,hsa - mir - 128和hsa - mir - 532 - 3p是FBLN5的上游调节因子,二者均显著上调。因此,FBLN5可能在颈动脉粥样硬化中发挥重要作用,涉及hsa - mir - 128和hsa - mir - 532 - 3p,并且可能成为治疗的重要靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85d2/8959633/ec2ecfbca12d/fgene-13-821650-g001.jpg

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