• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

在200 keV低温透射电子显微镜上进行高速高分辨率数据采集。

High-speed high-resolution data collection on a 200 keV cryo-TEM.

作者信息

Peck Jared V, Fay Jonathan F, Strauss Joshua D

机构信息

Biochemistry and Biophysics, University of North Carolina at Chapel Hill, 101 Mason Farm, Chapel Hill, NC 27599, USA.

Biochemistry and Biophysics, 6107 Thurston Bowles Building, Chapel Hill, NC 27599, USA.

出版信息

IUCrJ. 2022 Jan 29;9(Pt 2):243-252. doi: 10.1107/S2052252522000069. eCollection 2022 Mar 1.

DOI:10.1107/S2052252522000069
PMID:35371504
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8895008/
Abstract

Limitations to successful single-particle cryo-electron microscopy (cryo-EM) projects include stable sample generation, production of quality cryo-EM grids with randomly oriented particles embedded in thin vitreous ice and access to microscope time. To address the limitation of microscope time, methodologies to more efficiently collect data on a 200 keV Talos Arctica cryo-transmission electron microscope at speeds as fast as 720 movies per hour (∼17 000 per day) were tested. In this study, key parameters were explored to increase data collection speed including: (1) using the beam-image shift method to acquire multiple images per stage position, (2) employing UltrAufoil TEM grids with R0.6/1 hole spacing, (3) collecting hardware-binned data and (4) adjusting the image shift delay factor in . Here, eight EM maps of mouse apoferritin at 1.8-1.9 Å resolution were obtained in the analysis with data collection times for each dataset ranging from 56 min to 2 h. An EM map of mouse apoferritin at 1.78 Å was obtained from an overnight data collection at a speed of 500 movies per hour and subgroup analysis performed, with no significant variation observed in data quality by image shift distance and image shift delay. The findings and operating procedures detailed herein allow for rapid turnover of single-particle cryo-EM structure determination.

摘要

成功的单颗粒冷冻电子显微镜(cryo-EM)项目存在诸多限制,包括稳定的样品制备、制备出嵌入薄玻璃态冰中的随机取向颗粒的高质量冷冻电镜网格以及获得显微镜使用时间。为解决显微镜使用时间的限制,测试了在200 keV Talos Arctica冷冻透射电子显微镜上以高达每小时720部电影(约每天17000部)的速度更高效收集数据的方法。在本研究中,探索了提高数据收集速度的关键参数,包括:(1)使用束流图像偏移方法在每个阶段位置获取多个图像;(2)采用孔径间距为R0.6/1的UltrAufoil TEM网格;(3)收集硬件合并数据;(4)在……中调整图像偏移延迟因子。在此,通过分析获得了分辨率为1.8 - 1.9 Å的八张小鼠脱铁铁蛋白的冷冻电镜图谱,每个数据集的数据收集时间从56分钟到2小时不等。通过以每小时500部电影的速度进行过夜数据收集获得了分辨率为1.78 Å的小鼠脱铁铁蛋白冷冻电镜图谱,并进行了亚组分析,未观察到图像偏移距离和图像偏移延迟对数据质量有显著影响。本文详细介绍的研究结果和操作程序使得单颗粒冷冻电镜结构测定能够快速完成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/30e7a73679cd/m-09-00243-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/589a7334f930/m-09-00243-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/e9832052c1ea/m-09-00243-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/35fa29a2929c/m-09-00243-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/30e7a73679cd/m-09-00243-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/589a7334f930/m-09-00243-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/e9832052c1ea/m-09-00243-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/35fa29a2929c/m-09-00243-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe0f/8895008/30e7a73679cd/m-09-00243-fig4.jpg

相似文献

1
High-speed high-resolution data collection on a 200 keV cryo-TEM.在200 keV低温透射电子显微镜上进行高速高分辨率数据采集。
IUCrJ. 2022 Jan 29;9(Pt 2):243-252. doi: 10.1107/S2052252522000069. eCollection 2022 Mar 1.
2
High-resolution cryo-EM using beam-image shift at 200 keV.使用200keV束流图像偏移的高分辨率冷冻电镜。
IUCrJ. 2020 Oct 29;7(Pt 6):1179-1187. doi: 10.1107/S2052252520013482. eCollection 2020 Nov 1.
3
Routine Collection of High-Resolution cryo-EM Datasets Using 200 KV Transmission Electron Microscope.使用 200KV 透射电子显微镜常规收集高分辨率冷冻电镜数据集。
J Vis Exp. 2022 Mar 16(181). doi: 10.3791/63519.
4
Fabrication of carbon films with ∼ 500nm holes for cryo-EM with a direct detector device.用于直接检测设备的 cryo-EM 的具有 ∼500nm 孔的碳膜的制作。
J Struct Biol. 2014 Jan;185(1):42-7. doi: 10.1016/j.jsb.2013.11.002. Epub 2013 Nov 21.
5
Practical considerations for using K3 cameras in CDS mode for high-resolution and high-throughput single particle cryo-EM.用于 CDS 模式的 K3 相机进行高通量、高分辨率单颗粒冷冻电镜的实用考虑。
J Struct Biol. 2021 Sep;213(3):107745. doi: 10.1016/j.jsb.2021.107745. Epub 2021 May 11.
6
Light 'Em up: Efficient Screening of Gold Foil Grids in Cryo-EM.点亮它们:冷冻电镜中金箔网格的高效筛选
Front Mol Biosci. 2022 May 27;9:912363. doi: 10.3389/fmolb.2022.912363. eCollection 2022.
7
Single particle cryo-electron microscopy with an enhanced 200 kV cryo-TEM configuration achieves near-atomic resolution.采用增强型200 kV冷冻透射电子显微镜配置的单颗粒冷冻电子显微镜可实现近原子分辨率。
bioRxiv. 2024 May 10:2024.05.07.593029. doi: 10.1101/2024.05.07.593029.
8
Sub-2 Angstrom resolution structure determination using single-particle cryo-EM at 200 keV.在200 keV下使用单颗粒冷冻电镜进行亚2埃分辨率结构测定。
J Struct Biol X. 2020 Feb 28;4:100020. doi: 10.1016/j.yjsbx.2020.100020. eCollection 2020.
9
High-resolution single-particle imaging at 100-200 keV with the Gatan Alpine direct electron detector.使用 Gatan Alpine 直接电子探测器在 100-200keV 下进行高分辨率单颗粒成像。
J Struct Biol. 2024 Sep;216(3):108108. doi: 10.1016/j.jsb.2024.108108. Epub 2024 Jun 27.
10
Throughput and resolution with a next-generation direct electron detector.使用下一代直接电子探测器的通量与分辨率。
IUCrJ. 2019 Oct 24;6(Pt 6):1007-1013. doi: 10.1107/S2052252519012661. eCollection 2019 Nov 1.

引用本文的文献

1
Structural mechanism of H3K27 demethylation and crosstalk with heterochromatin markers.H3K27去甲基化的结构机制及其与异染色质标记的相互作用
Mol Cell. 2025 Aug 7;85(15):2869-2884.e6. doi: 10.1016/j.molcel.2025.06.025. Epub 2025 Jul 18.
2
Structure-guided design of partial agonists at an opioid receptor.阿片受体部分激动剂的结构导向设计。
Nat Commun. 2025 Mar 13;16(1):2518. doi: 10.1038/s41467-025-57734-5.
3
Structure-guided design of a peripherally restricted chemogenetic system.外周限制化学遗传系统的结构导向设计

本文引用的文献

1
Structure, function and pharmacology of human itch GPCRs.人类瘙痒 G 蛋白偶联受体的结构、功能和药理学。
Nature. 2021 Dec;600(7887):170-175. doi: 10.1038/s41586-021-04126-6. Epub 2021 Nov 17.
2
Routine sub-2.5 Å cryo-EM structure determination of GPCRs.常规的 2.5 埃以下 cryo-EM 结构测定 GPCRs。
Nat Commun. 2021 Jul 15;12(1):4333. doi: 10.1038/s41467-021-24650-3.
3
G-protein activation by a metabotropic glutamate receptor.G 蛋白被代谢型谷氨酸受体激活。
Cell. 2024 Dec 26;187(26):7433-7449.e20. doi: 10.1016/j.cell.2024.11.001. Epub 2024 Dec 3.
4
High-affinity agonists reveal recognition motifs for the MRGPRD GPCR.高亲和力激动剂揭示了MRGPRD G蛋白偶联受体的识别基序。
Cell Rep. 2024 Dec 24;43(12):114942. doi: 10.1016/j.celrep.2024.114942. Epub 2024 Nov 23.
5
A neurodevelopmental disorder mutation locks G proteins in the transitory pre-activated state.一种神经发育障碍突变将 G 蛋白锁定在短暂的预激活状态。
Nat Commun. 2024 Aug 5;15(1):6643. doi: 10.1038/s41467-024-50964-z.
6
MRGPRX4 mediates phospho-drug-associated pruritus in a humanized mouse model.MRGPRX4 介导了人源化小鼠模型中磷酸药物相关的瘙痒。
Sci Transl Med. 2024 May 8;16(746):eadk8198. doi: 10.1126/scitranslmed.adk8198.
7
Miffi: Improving the accuracy of CNN-based cryo-EM micrograph filtering with fine-tuning and Fourier space information.Miffi:通过微调与傅里叶空间信息提高基于 CNN 的冷冻电镜显微图滤波的准确性。
J Struct Biol. 2024 Jun;216(2):108072. doi: 10.1016/j.jsb.2024.108072. Epub 2024 Feb 29.
8
Miffi: Improving the accuracy of CNN-based cryo-EM micrograph filtering with fine-tuning and Fourier space information.米菲:通过微调与傅里叶空间信息提高基于卷积神经网络的冷冻电镜显微照片滤波精度
bioRxiv. 2024 Feb 27:2023.12.08.570849. doi: 10.1101/2023.12.08.570849.
9
Design and structural validation of peptide-drug conjugate ligands of the kappa-opioid receptor.设计和结构验证 κ 阿片受体肽药物偶联物配体。
Nat Commun. 2023 Dec 6;14(1):8064. doi: 10.1038/s41467-023-43718-w.
10
Molecular basis of polyspecific drug and xenobiotic recognition by OCT1 and OCT2.OCT1 和 OCT2 对多特异性药物和外源性化学物质识别的分子基础。
Nat Struct Mol Biol. 2023 Jul;30(7):1001-1011. doi: 10.1038/s41594-023-01017-4. Epub 2023 Jun 8.
Nature. 2021 Jul;595(7867):450-454. doi: 10.1038/s41586-021-03680-3. Epub 2021 Jun 30.
4
Practical considerations for using K3 cameras in CDS mode for high-resolution and high-throughput single particle cryo-EM.用于 CDS 模式的 K3 相机进行高通量、高分辨率单颗粒冷冻电镜的实用考虑。
J Struct Biol. 2021 Sep;213(3):107745. doi: 10.1016/j.jsb.2021.107745. Epub 2021 May 11.
5
Coma-corrected rapid single-particle cryo-EM data collection on the CRYO ARM 300.在 CRYO ARM 300 上进行校正昏迷的快速单颗粒冷冻电镜数据收集。
Acta Crystallogr D Struct Biol. 2021 May 1;77(Pt 5):555-564. doi: 10.1107/S2059798321002151. Epub 2021 Apr 14.
6
Experimental evaluation of super-resolution imaging and magnification choice in single-particle cryo-EM.单颗粒冷冻电镜中超高分辨率成像及放大倍数选择的实验评估
J Struct Biol X. 2021 Mar 13;5:100047. doi: 10.1016/j.yjsbx.2021.100047. eCollection 2021.
7
Structure of the SARS-CoV-2 RNA-dependent RNA polymerase in the presence of favipiravir-RTP.SARS-CoV-2 RNA 依赖性 RNA 聚合酶在法匹拉韦 - RTp 存在下的结构。
Proc Natl Acad Sci U S A. 2021 Feb 16;118(7). doi: 10.1073/pnas.2021946118.
8
Setting up and operating a cryo-EM laboratory.建立和运行冷冻电镜实验室。
Q Rev Biophys. 2021 Jan 8;54:e2. doi: 10.1017/S003358352000013X.
9
Setting Up Parallel Illumination on the Talos Arctica for High-Resolution Data Collection.为了收集高分辨率数据,在 Talos Arctica 上设置平行照明。
Methods Mol Biol. 2021;2215:125-144. doi: 10.1007/978-1-0716-0966-8_6.
10
Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction.非均匀细化:自适应正则化可改善单颗粒冷冻电镜重构。
Nat Methods. 2020 Dec;17(12):1214-1221. doi: 10.1038/s41592-020-00990-8. Epub 2020 Nov 30.