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用于检测和生产[具体环境未提及]中短链脂肪酸的遗传生物传感器的转运体驱动工程

Transporter-Driven Engineering of a Genetic Biosensor for the Detection and Production of Short-Branched Chain Fatty Acids in .

作者信息

Miyake Ryoma, Ling Hua, Foo Jee Loon, Fugono Nobutake, Chang Matthew Wook

机构信息

NUS Synthetic Biology for Clinical and Technological Innovation (SynCTI), National University of Singapore, Singapore, Singapore.

Synthetic Biology Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.

出版信息

Front Bioeng Biotechnol. 2022 Mar 18;10:838732. doi: 10.3389/fbioe.2022.838732. eCollection 2022.

Abstract

Biosensors can be used for real-time monitoring of metabolites and high-throughput screening of producer strains. Use of biosensors has facilitated strain engineering to efficiently produce value-added compounds. Following our recent work on the production of short branched-chain fatty acids (SBCFAs) in engineered , here we harnessed a weak organic acid transporter Pdr12p, engineered a whole-cell biosensor to detect exogenous and intracellular SBCFAs and optimized the biosensor's performance by varying expression. We firstly constructed the biosensor and evaluated its response to a range of short-chain carboxylic acids. Next, we optimized its sensitivity and operational range by deletion and overexpression of . We found that the biosensor responded to exogenous SBCFAs including isovaleric acid, isobutyric acid and 2-methylbutanoic acid. deletion enhanced the biosensor's sensitivity to isovaleric acid at a low concentration and overexpression shifted the operational range towards a higher concentration. Lastly, the deletion of improved the biosensor's sensitivity to the SBCFAs produced in our previously engineered SBCFA-overproducing strain. To our knowledge, our work represents the first study on employing an ATP-binding-cassette transporter to engineer a transcription-factor-based genetic biosensor for sensing SBCFAs in . Our findings provide useful insights into SBCFA detection by a genetic biosensor that will facilitate the screening of SBCFA-overproducing strains.

摘要

生物传感器可用于代谢物的实时监测和生产菌株的高通量筛选。生物传感器的使用促进了菌株工程改造,以高效生产增值化合物。继我们最近关于在工程菌中生产短链支链脂肪酸(SBCFAs)的工作之后,在此我们利用了一种弱有机酸转运蛋白Pdr12p,构建了一种全细胞生物传感器来检测外源和细胞内的SBCFAs,并通过改变[具体基因名称]的表达来优化生物传感器的性能。我们首先构建了生物传感器,并评估了其对一系列短链羧酸的响应。接下来,我们通过删除和过表达[具体基因名称]来优化其灵敏度和工作范围。我们发现该生物传感器对外源SBCFAs有响应,包括异戊酸、异丁酸和2-甲基丁酸。删除[具体基因名称]增强了生物传感器在低浓度下对异戊酸的灵敏度,而过表达[具体基因名称]则将工作范围转移到更高浓度。最后,删除[具体基因名称]提高了生物传感器对我们之前构建的SBCFA高产菌株中产生的SBCFAs的灵敏度。据我们所知,我们的工作代表了首次利用ATP结合盒转运蛋白构建基于转录因子的基因生物传感器来检测[具体生物]中的SBCFAs的研究。我们的发现为遗传生物传感器检测SBCFAs提供了有用的见解,这将有助于筛选SBCFA高产菌株。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05a4/8975619/ffd258a0a053/fbioe-10-838732-g001.jpg

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