Graduate School of Engineering, Nagasaki University, Bunkyo 1-14, Nagasaki 852-8521, Japan.
RIKEN Center for Computational Science, 7-1-26, Minatojima-minami-machi, Chuo-ku, Kobe 650-0047, Japan.
J Phys Chem A. 2022 Apr 21;126(15):2397-2406. doi: 10.1021/acs.jpca.2c02032. Epub 2022 Apr 7.
In the present study, we have examined density functional theory methods for the calculation of the interaction energy between a small molecule and its environment. For simple systems such as a neutral solute in a neutral solvent, good accuracy can be attained using low-cost "3c" methods, in particular rSCAN-3c. When part(s) of the system is charged, the accurate computation of the interactions is more challenging. In these cases, we find the B97M-V/def2-mTZVP method to agree well with reference values; it also shows good accuracy for the more straightforward neutral systems. Thus, B97M-V/def2-mTZVP provides a means for accurate and low-cost computation of interaction energies, notably the binding between a substrate or a drug molecule and an enzyme, which may facilitate rational drug design.
在本研究中,我们研究了用于计算小分子与其环境之间相互作用能的密度泛函理论方法。对于简单系统,如中性溶剂中的中性溶质,使用低成本的“3c”方法(特别是 rSCAN-3c)可以获得很好的精度。当系统的一部分带电时,准确计算相互作用更加具有挑战性。在这些情况下,我们发现 B97M-V/def2-mTZVP 方法与参考值吻合良好;它对更简单的中性系统也表现出良好的精度。因此,B97M-V/def2-mTZVP 为准确且低成本计算相互作用能提供了一种方法,特别是在研究底物或药物分子与酶之间的结合方面,这可能有助于合理的药物设计。