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基于变构 DNA 酶的多个逻辑电路的构建。

Construction of Multiple Logic Circuits Based on Allosteric DNAzymes.

机构信息

School of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China.

Knowledge Engineering and Discovery Research Institute, Auckland University of Technology, Auckland 1010, New Zealand.

出版信息

Biomolecules. 2022 Mar 24;12(4):495. doi: 10.3390/biom12040495.

Abstract

In DNA computing, the implementation of complex and stable logic operations in a universal system is a critical challenge. It is necessary to develop a system with complex logic functions based on a simple mechanism. Here, the strategy to control the secondary structure of assembled DNAzymes' conserved domain is adopted to regulate the activity of DNAzymes and avoid the generation of four-way junctions, and makes it possible to implement basic logic gates and their cascade circuits in the same system. In addition, the purpose of threshold control achieved by the allosteric secondary structure implements a three-input DNA voter with one-vote veto function. The scalability of the system can be remarkably improved by adjusting the threshold to implement a DNA voter with 2n + 1 inputs. The proposed strategy provides a feasible idea for constructing more complex DNA circuits and a highly integrated computing system.

摘要

在 DNA 计算中,在通用系统中实现复杂而稳定的逻辑运算,是一个关键的挑战。有必要开发一种基于简单机制的具有复杂逻辑功能的系统。在这里,采用控制组装 DNA 酶保守结构域的二级结构的策略来调节 DNA 酶的活性并避免四链结的产生,从而使在同一系统中实现基本逻辑门及其级联电路成为可能。此外,通过变构二级结构实现的门限控制目的,实现了具有一票否决功能的三输入 DNA 投票器。通过调整门限来实现具有 2n+1 个输入的 DNA 投票器,可显著提高系统的可扩展性。所提出的策略为构建更复杂的 DNA 电路和高度集成的计算系统提供了可行的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c96/9032175/dc085d9804b4/biomolecules-12-00495-g001.jpg

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