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利用具有计算特异性的相位成像进行细胞周期阶段分类。

Cell Cycle Stage Classification Using Phase Imaging with Computational Specificity.

作者信息

He Yuchen R, He Shenghua, Kandel Mikhail E, Lee Young Jae, Hu Chenfei, Sobh Nahil, Anastasio Mark A, Popescu Gabriel

机构信息

Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.

Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.

出版信息

ACS Photonics. 2022 Apr 20;9(4):1264-1273. doi: 10.1021/acsphotonics.1c01779. Epub 2022 Mar 8.

Abstract

Traditional methods for cell cycle stage classification rely heavily on fluorescence microscopy to monitor nuclear dynamics. These methods inevitably face the typical phototoxicity and photobleaching limitations of fluorescence imaging. Here, we present a cell cycle detection workflow using the principle of phase imaging with computational specificity (PICS). The proposed method uses neural networks to extract cell cycle-dependent features from quantitative phase imaging (QPI) measurements directly. Our results indicate that this approach attains very good accuracy in classifying live cells into G1, S, and G2/M stages, respectively. We also demonstrate that the proposed method can be applied to study single-cell dynamics within the cell cycle as well as cell population distribution across different stages of the cell cycle. We envision that the proposed method can become a nondestructive tool to analyze cell cycle progression in fields ranging from cell biology to biopharma applications.

摘要

传统的细胞周期阶段分类方法严重依赖荧光显微镜来监测细胞核动态。这些方法不可避免地面临荧光成像典型的光毒性和光漂白限制。在此,我们提出一种利用具有计算特异性的相成像原理(PICS)的细胞周期检测工作流程。所提出的方法使用神经网络直接从定量相成像(QPI)测量中提取细胞周期依赖性特征。我们的结果表明,这种方法在将活细胞分别分类为G1、S和G2/M期时具有非常高的准确性。我们还证明,所提出的方法可用于研究细胞周期内的单细胞动态以及细胞群体在细胞周期不同阶段的分布。我们设想,所提出的方法可以成为一种无损工具,用于分析从细胞生物学到生物制药应用等领域的细胞周期进程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/112d/9026251/b1b756532450/ph1c01779_0001.jpg

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