Whitehead Institute for Biomedical Research, Cambridge, MA, USA.
Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Nat Microbiol. 2022 Jun;7(6):868-881. doi: 10.1038/s41564-022-01104-0. Epub 2022 Apr 28.
Protein kinases regulate fundamental aspects of eukaryotic cell biology, making them attractive chemotherapeutic targets in parasites like Plasmodium spp. and Toxoplasma gondii. To systematically examine the parasite kinome, we developed a high-throughput tagging (HiT) strategy to endogenously label protein kinases with an auxin-inducible degron and fluorophore. Hundreds of tagging vectors were assembled from synthetic sequences in a single reaction and used to generate pools of mutants to determine localization and function. Examining 1,160 arrayed clones, we assigned 40 protein localizations and associated 15 kinases with distinct defects. The fitness of tagged alleles was also measured by pooled screening, distinguishing delayed from acute phenotypes. A previously unstudied kinase, associated with a delayed phenotype, was shown to be a regulator of invasion and egress. We named the kinase Store Potentiating/Activating Regulatory Kinase (SPARK), based on its impact on intracellular Ca stores. Despite homology to mammalian 3-phosphoinositide-dependent protein kinase-1 (PDK1), SPARK lacks a lipid-binding domain, suggesting a rewiring of the pathway in parasites. HiT screening extends genome-wide approaches into complex cellular phenotypes, providing a scalable and versatile platform to dissect parasite biology.
蛋白激酶调节真核细胞生物学的基本方面,使它们成为疟原虫和刚地弓形虫等寄生虫中有吸引力的化学治疗靶点。为了系统地研究寄生虫激酶组,我们开发了一种高通量标记(HiT)策略,用植物生长素诱导的降解结构域和荧光团内源性标记蛋白激酶。数百个标记载体可以在单个反应中从合成序列中组装,并用于生成突变体池以确定定位和功能。通过检测 1160 个排列的克隆,我们确定了 40 种蛋白定位,并将 15 种激酶与特定的缺陷相关联。通过 pooled screening 还测量了标记等位基因的适应性,以区分延迟表型和急性表型。先前未研究过的与延迟表型相关的激酶被证明是入侵和出芽的调节因子。我们将这种激酶命名为 Store Potentiating/Activating Regulatory Kinase (SPARK),基于其对细胞内 Ca 库的影响。尽管与哺乳动物的 3-磷酸肌醇依赖性蛋白激酶-1(PDK1)同源,但 SPARK 缺乏脂质结合结构域,这表明寄生虫途径发生了重排。HiT 筛选将全基因组方法扩展到复杂的细胞表型,为解析寄生虫生物学提供了一种可扩展且通用的平台。