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揭示蛋白质中线性链和低势垒氢键结构与功能作用的原子分辨率新见解。

True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins.

机构信息

Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, Jülich, Germany.

JuStruct: Jülich Center for Structural Biology, Forschungszentrum Jülich, Jülich, Germany.

出版信息

Nat Struct Mol Biol. 2022 May;29(5):440-450. doi: 10.1038/s41594-022-00762-2. Epub 2022 Apr 28.

DOI:10.1038/s41594-022-00762-2
PMID:35484235
Abstract

Hydrogen bonds are fundamental to the structure and function of biological macromolecules and have been explored in detail. The chains of hydrogen bonds (CHBs) and low-barrier hydrogen bonds (LBHBs) were proposed to play essential roles in enzyme catalysis and proton transport. However, high-resolution structural data from CHBs and LBHBs is limited. The challenge is that their 'visualization' requires ultrahigh-resolution structures of the ground and functionally important intermediate states to identify proton translocation events and perform their structural assignment. Our true-atomic-resolution structures of the light-driven proton pump bacteriorhodopsin, a model in studies of proton transport, show that CHBs and LBHBs not only serve as proton pathways, but also are indispensable for long-range communications, signaling and proton storage in proteins. The complete picture of CHBs and LBHBs discloses their multifunctional roles in providing protein functions and presents a consistent picture of proton transport and storage resolving long-standing debates and controversies.

摘要

氢键是生物大分子结构和功能的基础,已经得到了详细的研究。氢键链(CHBs)和低势垒氢键(LBHBs)被认为在酶催化和质子传递中发挥着重要作用。然而,CHBs 和 LBHBs 的高分辨率结构数据有限。挑战在于,要“可视化”它们,需要超分辨率结构的基态和功能重要的中间态来识别质子转移事件,并进行结构分配。我们对光驱动质子泵菌视紫红质的真实原子分辨率结构的研究,这种蛋白是质子传递研究的模型,表明 CHBs 和 LBHBs 不仅作为质子通道,而且对于蛋白质中的长程通讯、信号传递和质子储存也是必不可少的。CHBs 和 LBHBs 的完整图像揭示了它们在提供蛋白质功能方面的多功能作用,并提供了一个一致的质子传递和储存的图像,解决了长期存在的争论和争议。

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Nat Commun. 2021 Jan 27;12(1):629. doi: 10.1038/s41467-020-20596-0.
3
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4
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J Synchrotron Radiat. 2025 May 1;32(Pt 3):548-566. doi: 10.1107/S1600577525002735. Epub 2025 Apr 23.
5
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