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深入探讨三螺旋转录因子对盐胁迫及其他胁迫在桂花中的响应。

Insights into the trihelix transcription factor responses to salt and other stresses in Osmanthus fragrans.

机构信息

Key Laboratory of Landscape Architecture, Jiangsu Province, College of Landscape Architecture, Nanjing Forestry University, Nanjing, 210037, People's Republic of China.

Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, 210037, People's Republic of China.

出版信息

BMC Genomics. 2022 Apr 30;23(1):334. doi: 10.1186/s12864-022-08569-7.

Abstract

BACKGROUND

Osmanthus fragrans is an evergreen plant with high ornamental and economic values. However, they are easily injured by salt stress, which severely limits their use in high salinity areas. The trihelix transcription factor (TF) family, as one of the earliest discovered TF families in plants, plays an essential part in responses to different abiotic stresses, and it has potential functions in improving the salt-tolerance capability of O. fragrans.

RESULTS

In this study, 56 trihelix genes (OfGTs) were first identified in O. fragrans and then divided into five subfamilies in accordance with a phylogenetic tree analysis. The OfGTs were found to be located randomly on the 20 O. fragrans chromosomes, and an analysis of gene replication events indicated that the OfGT gene family underwent strong purification selection during the evolutionary process. The analysis of conserved motifs and gene structures implied that the OfGT members in the same subfamily have similar conserved motifs and gene structures. A promoter cis-elements analysis showed that all the OfGT genes contained multiple abiotic and hormonal stress-related cis-elements. The RNA-seq data suggested that the OfGTs have specific expression patterns in different tissues, and some were induced by salt stress. The qRT-PCR analysis of 12 selected OfGTs confirmed that OfGT1/3/21/33/42/45/46/52 were induced, with OfGT3/42/46 being the most highly expressed. In addition, OfGT42/OfGT46 had a co-expression pattern under salt-stress conditions. OfGT3/42/46 were mainly localized in the nuclei and exhibited no transcriptional activities based on the analysis of the subcellular localization and transcriptional activity assay. Furthermore, the expression levels of most of the selected OfGTs were induced by multiple abiotic and hormonal stresses, and the expression patterns of some OfGTs were also highly correlated with gibberellic acid and methyl jasmonate levels. Remarkably, the transient transformation results showed lower MDA content and increased expression of ROS-related genes NbAPX in transgenic plants, which implying OfGT3/42/46 may improve the salt tolerance of tobacco.

CONCLUSIONS

The results implied that the OfGT genes were related to abiotic and hormonal stress responses in O. fragrans, and that the OfGT3/42/46 genes in particular might play crucial roles in responses to salt stress. This study made a comprehensive summary of the OfGT gene family, including functions and co-expression patterns in response to salt and other stresses, as well as an evolutionary perspective. Consequently, it lays a foundation for further functional characterizations of these genes.

摘要

背景

桂花是一种具有高观赏和经济价值的常绿植物。然而,它们容易受到盐胁迫的伤害,这严重限制了它们在高盐地区的使用。三螺旋转录因子(TF)家族作为植物中最早发现的 TF 家族之一,在应对不同非生物胁迫方面起着重要作用,并且在提高桂花的耐盐性方面具有潜在的功能。

结果

在这项研究中,首次在桂花中鉴定了 56 个三螺旋基因(OfGTs),然后根据系统发育树分析将其分为五个亚家族。OfGTs 被发现随机分布在桂花的 20 条染色体上,基因复制事件的分析表明,OfGT 基因家族在进化过程中经历了强烈的纯化选择。保守基序和基因结构的分析表明,同一亚家族的 OfGT 成员具有相似的保守基序和基因结构。启动子顺式元件分析表明,所有 OfGT 基因都含有多个非生物和激素胁迫相关的顺式元件。RNA-seq 数据表明,OfGTs 在不同组织中有特定的表达模式,一些基因受到盐胁迫诱导。对 12 个选定的 OfGT 的 qRT-PCR 分析证实,OfGT1/3/21/33/42/45/46/52 被诱导,其中 OfGT3/42/46 表达量最高。此外,OfGT42/OfGT46 在盐胁迫条件下表现出共表达模式。OfGT3/42/46 主要定位于细胞核内,根据亚细胞定位和转录活性分析,没有转录活性。此外,大多数选定的 OfGT 的表达水平受到多种非生物和激素胁迫的诱导,并且一些 OfGT 的表达模式也与赤霉素和茉莉酸甲酯水平高度相关。值得注意的是,瞬时转化结果表明,转基因植物的 MDA 含量降低,ROS 相关基因 NbAPX 的表达增加,这表明 OfGT3/42/46 可能提高了烟草的耐盐性。

结论

研究结果表明,OfGT 基因与桂花的非生物和激素胁迫反应有关,特别是 OfGT3/42/46 基因可能在盐胁迫反应中发挥关键作用。本研究对 OfGT 基因家族进行了全面总结,包括其在响应盐胁迫和其他胁迫方面的功能和共表达模式,以及进化视角。因此,它为进一步研究这些基因的功能特性奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b470/9055724/b514ca70f1b9/12864_2022_8569_Fig1_HTML.jpg

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