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基于计算结构的抗体设计进展。

Advances in computational structure-based antibody design.

机构信息

Oxford Protein Informatics Group, Department of Statistics, University of Oxford, Oxford OX1 3LB, UK. Electronic address: https://twitter.com/@AlissaHummer.

Oxford Protein Informatics Group, Department of Statistics, University of Oxford, Oxford OX1 3LB, UK. Electronic address: https://twitter.com/@brennanaba.

出版信息

Curr Opin Struct Biol. 2022 Jun;74:102379. doi: 10.1016/j.sbi.2022.102379. Epub 2022 Apr 28.

DOI:10.1016/j.sbi.2022.102379
PMID:35490649
Abstract

Antibodies are currently the most important class of biotherapeutics and are used to treat numerous diseases. Recent advances in computational methods are ushering in a new era of antibody design, driven in part by accurate structure prediction. Previously, structure-based antibody design has been limited to a relatively small number of cases where accurate structures or models of both the target antigen and antibody were available. As we move towards a time where it is possible to accurately model most antibodies and antigens, and to reliably predict their binding site, there is vast potential for true computational antibody design. In this review, we describe the latest methods that promise to launch a paradigm shift towards entirely in silico structure-based antibody design.

摘要

抗体是目前最重要的一类生物疗法,用于治疗多种疾病。计算方法的最新进展正在开创抗体设计的新时代,这在一定程度上是由准确的结构预测驱动的。以前,基于结构的抗体设计仅限于相对较少的情况,即目标抗原和抗体的准确结构或模型都可用。随着我们迈向能够准确模拟大多数抗体和抗原,并可靠预测其结合部位的时代,真正的计算抗体设计具有巨大的潜力。在这篇综述中,我们描述了最新的方法,这些方法有望引发向完全基于计算机的结构抗体设计的范式转变。

相似文献

1
Advances in computational structure-based antibody design.基于计算结构的抗体设计进展。
Curr Opin Struct Biol. 2022 Jun;74:102379. doi: 10.1016/j.sbi.2022.102379. Epub 2022 Apr 28.
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An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants.抗体-抗原对接和亲和力预测的扩展基准揭示了抗体识别决定因素的新见解。
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IsAb: a computational protocol for antibody design.IsAb:一种抗体设计的计算协议。
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Computational Tools for Aiding Rational Antibody Design.辅助合理抗体设计的计算工具
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Computational approaches to therapeutic antibody design: established methods and emerging trends.计算方法在治疗性抗体设计中的应用:已确立的方法和新兴趋势。
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Ab-Ligity: identifying sequence-dissimilar antibodies that bind to the same epitope.Ab-Ligity:鉴定与相同表位结合的序列不同的抗体。
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Robustification of RosettaAntibody and Rosetta SnugDock.罗塞塔抗体和罗塞塔紧密对接的强化。
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[Regression analysis to select native-like structures from decoys of antigen-antibody docking].[用于从抗原-抗体对接诱饵中选择类天然结构的回归分析]
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Prediction of Antibody Epitopes.抗体表位的预测
Methods Mol Biol. 2015;1348:23-32. doi: 10.1007/978-1-4939-2999-3_4.

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