• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

用于选择性增强茶()类黄酮的新型配体的虚拟筛选和对接分析。 注:原文中“tea ()”括号处信息缺失。

Virtual screening and docking analysis of novel ligands for selective enhancement of tea () flavonoids.

作者信息

Majumder Anusha, Kanti Mondal Sunil, Mukhoty Samyabrata, Bag Sagar, Mondal Anupam, Begum Yasmin, Sharma Kalpna, Banik Avishek

机构信息

Laboratory of Microbial Interaction, School of Biotechnology, Presidency University, Kolkata, West Bengal, India.

Department of Biotechnology, The University of Burdwan, Burdwan, West Bengal, India.

出版信息

Food Chem X. 2022 Jan 18;13:100212. doi: 10.1016/j.fochx.2022.100212. eCollection 2022 Mar 30.

DOI:10.1016/j.fochx.2022.100212
PMID:35498963
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9039891/
Abstract

Flavour of tea is mainly contributed by a group of polyphenols - flavonoids. However, the content of flavonoid fluctuates seasonally and is found to be higher in the first flush of tea, when compared to the second flush. This disparity in the flavonoid content, and hence taste, incurs heavy economic losses to the tea plantation industry each harvest season. For our present study, four key product-specific enzymes (PAL, FNS, FLS and ANS) of the tea-specific flavonoid pathway were selected to perform molecular docking studies with specific virtually screened allosteric modulators. Results of docking analyses showed Naringenin, 2-Morpholin-4-ium-4-ylethanesulfonate, 6-C-Glucosylquercetin, 2-Oxoglutaric acid, 3,5,7,3',4'-pentahydroxyflavone to be capable of improving the spontaneity of the enzyme-substrate reactions in terms of docking score, RMSD values, and non-covalent interactions (H-bond,hydrophobic interaction, Π-stacking, salt bridge, etc.). Further, the evolutionary relationship of tea flavonoid pathway enzymes was constructed and compared with related taxa. The codon usage-based of tea flavonoid biosynthetic genes indicated the non-biasness of their nucleotide composition. Overall this study will provide a direction towards putative ligand-dependent enhancement of flavonoid content, irrespective of seasonal variation.

摘要

茶的风味主要由一组多酚类物质——类黄酮决定。然而,类黄酮的含量会随季节波动,并且发现与第二次采摘相比,在第一次采摘的茶叶中含量更高。类黄酮含量以及由此导致的口感差异,在每个收获季节给茶叶种植产业带来了巨大的经济损失。在我们目前的研究中,选择了茶特异性类黄酮途径的四种关键产物特异性酶(苯丙氨酸解氨酶、黄酮合酶、黄酮醇合酶和花青素合酶)与特定的虚拟筛选变构调节剂进行分子对接研究。对接分析结果表明,柚皮素、2-吗啉-4-基乙磺酸盐、6-C-葡萄糖基槲皮素、2-氧代戊二酸、3,5,7,3',4'-五羟基黄酮在对接分数、均方根偏差值和非共价相互作用(氢键、疏水相互作用、π堆积、盐桥等)方面能够提高酶-底物反应的自发性。此外,构建了茶类黄酮途径酶的进化关系并与相关分类群进行了比较。基于密码子使用情况的茶类黄酮生物合成基因表明其核苷酸组成没有偏向性。总体而言,这项研究将为无论季节变化如何,通过假定配体依赖方式提高类黄酮含量提供一个方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/82e9d9256040/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/27a14ae98dfe/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/9ee04eb9a450/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/4ad4a9fd9b79/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/0654550f4adc/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/82e9d9256040/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/27a14ae98dfe/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/9ee04eb9a450/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/4ad4a9fd9b79/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/0654550f4adc/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7fd8/9039891/82e9d9256040/gr5.jpg

相似文献

1
Virtual screening and docking analysis of novel ligands for selective enhancement of tea () flavonoids.用于选择性增强茶()类黄酮的新型配体的虚拟筛选和对接分析。 注:原文中“tea ()”括号处信息缺失。
Food Chem X. 2022 Jan 18;13:100212. doi: 10.1016/j.fochx.2022.100212. eCollection 2022 Mar 30.
2
Genome-Wide Identification and Expression Profiles of 13 Key Structural Gene Families Involved in the Biosynthesis of Rice Flavonoid Scaffolds.全基因组鉴定和表达谱分析参与水稻类黄酮支架生物合成的 13 个关键结构基因家族。
Genes (Basel). 2022 Feb 24;13(3):410. doi: 10.3390/genes13030410.
3
The Effects of Ultraviolet A/B Treatments on Anthocyanin Accumulation and Gene Expression in Dark-Purple Tea Cultivar 'Ziyan' ().紫外光 A/B 处理对深紫色茶叶品种“紫阳”()中花色素苷积累和基因表达的影响。
Molecules. 2020 Jan 15;25(2):354. doi: 10.3390/molecules25020354.
4
Dynamic changes in catechin levels and catechin biosynthesis-related gene expression in albino tea plants (Camellia sinensis L.).白化茶树(Camellia sinensis L.)中儿茶素水平的动态变化及儿茶素生物合成相关基因表达。
Plant Physiol Biochem. 2013 Oct;71:132-43. doi: 10.1016/j.plaphy.2013.06.019. Epub 2013 Jul 3.
5
Differential expression of flavonoid biosynthesis genes and accumulation of phenolic compounds in common buckwheat (Fagopyrum esculentum).普通荞麦(苦荞麦)中黄酮类生物合成基因的差异表达及酚类化合物的积累
J Agric Food Chem. 2010 Dec 8;58(23):12176-81. doi: 10.1021/jf103310g. Epub 2010 Nov 9.
6
Relationship between gene expression and the accumulation of catechin during spring and autumn in tea plants (Camellia sinensis L.).茶树(Camellia sinensis L.)春季和秋季基因表达与儿茶素积累之间的关系。
Hortic Res. 2015 Apr 1;2:15011. doi: 10.1038/hortres.2015.11. eCollection 2015.
7
Identification and Characterization of Flavonoid Biosynthetic Enzyme Genes in Salvia miltiorrhiza (Lamiaceae).丹参(唇形科)类黄酮生物合成酶基因的鉴定和特征分析。
Molecules. 2018 Jun 16;23(6):1467. doi: 10.3390/molecules23061467.
8
A De novo Transcriptomic Approach to Identify Flavonoids and Anthocyanins "Switch-Off" in Olive (Olea europaea L.) Drupes at Different Stages of Maturation.一种从头转录组学方法,用于鉴定橄榄(油橄榄)果实不同成熟阶段中黄酮类化合物和花青素的“关闭”情况 。
Front Plant Sci. 2016 Jan 19;6:1246. doi: 10.3389/fpls.2015.01246. eCollection 2015.
9
Effects of GABA on the polyphenol accumulation and antioxidant activities in tea plants (Camellia sinensis L.) under heat-stress conditions.GABA 对热胁迫条件下茶树(Camellia sinensis L.)多酚积累和抗氧化活性的影响。
Plant Physiol Biochem. 2021 Feb;159:363-371. doi: 10.1016/j.plaphy.2021.01.003. Epub 2021 Jan 7.
10
Distribution and biosynthesis of flavan-3-ols in Camellia sinensis seedlings and expression of genes encoding biosynthetic enzymes.山茶属幼苗中黄烷-3-醇的分布与生物合成及生物合成酶编码基因的表达。
Phytochemistry. 2010 Apr;71(5-6):559-66. doi: 10.1016/j.phytochem.2010.01.010. Epub 2010 Feb 25.

引用本文的文献

1
Effects of combined binding of chlorogenic acid/caffeic acid and gallic acid to trypsin on their synergistic antioxidant activity, enzyme activity and stability.绿原酸/咖啡酸与没食子酸联合结合对胰蛋白酶的影响及其协同抗氧化活性、酶活性和稳定性
Food Chem X. 2023 Mar 25;18:100664. doi: 10.1016/j.fochx.2023.100664. eCollection 2023 Jun 30.
2
New N4-Donor Ligands as Supramolecular Guests for DNA and RNA: Synthesis, Structural Characterization, In Silico, Spectrophotometric and Antimicrobial Studies.新型 N4-给体配体作为 DNA 和 RNA 的超分子客体:合成、结构表征、计算机模拟、光谱和抗菌研究。
Molecules. 2023 Jan 3;28(1):400. doi: 10.3390/molecules28010400.
3

本文引用的文献

1
Exploring tea (Camellia sinensis) microbiome: Insights into the functional characteristics and their impact on tea growth promotion.探索茶(Camellia sinensis)微生物组:深入了解其功能特性及其对茶叶生长促进的影响。
Microbiol Res. 2022 Jan;254:126890. doi: 10.1016/j.micres.2021.126890. Epub 2021 Oct 9.
2
Tea and its phytochemicals: Hidden health benefits & modulation of signaling cascade by phytochemicals.茶及其植物化学物质:隐藏的健康益处和植物化学物质对信号级联的调节。
Food Chem. 2022 Mar 1;371:131098. doi: 10.1016/j.foodchem.2021.131098. Epub 2021 Sep 9.
3
In silico analysis of RNA-dependent RNA polymerase of the SARS-CoV-2 and therapeutic potential of existing antiviral drugs.
CD, UV, and In Silico Insights on the Effect of 1,3-Bis(1'-uracilyl)-2-propanone on Serum Albumin Structure.
1,3-双(1'-尿嘧啶基)-2-丙酮对血清白蛋白结构影响的 CD、UV 和计算机模拟研究
Biomolecules. 2022 Aug 3;12(8):1071. doi: 10.3390/biom12081071.
4
Exploring the Parallel G-Quadruplex Nucleic Acid World: A Spectroscopic and Computational Investigation on the Binding of the c-myc Oncogene NHE III1 Region by the Phytochemical Polydatin.探索平行 G-四链体核酸世界:原花青素与癌基因 c-myc NHE III1 区结合的光谱和计算研究。
Molecules. 2022 May 7;27(9):2997. doi: 10.3390/molecules27092997.
5
The Healing Power of Clean Rivers: In Silico Evaluation of the Antipsoriatic Potential of Apiin and Hyperoside Plant Metabolites Contained in River Waters.清洁河流的治愈力量:水中芹糖异甘草苷和金丝桃苷植物代谢物抗银屑病潜力的计算机评估。
Int J Environ Res Public Health. 2022 Feb 22;19(5):2502. doi: 10.3390/ijerph19052502.
基于 SARS-CoV-2 的 RNA 依赖性 RNA 聚合酶的计算机分析及现有抗病毒药物的治疗潜力。
Comput Biol Med. 2021 Aug;135:104591. doi: 10.1016/j.compbiomed.2021.104591. Epub 2021 Jun 23.
4
Endophytic Fungi from T. Chen Producing Naringenin Inhibit the Growth of by Interfering with Cell Membrane, DNA, and Protein.Chen 内生真菌产生的柚皮素通过干扰细胞膜、DNA 和蛋白质抑制的生长。
J Med Food. 2021 Feb;24(2):116-123. doi: 10.1089/jmf.2020.4686. Epub 2021 Feb 1.
5
Potential application of CHS and 4CL genes from grape endophytic fungus in production of naringenin and resveratrol and the improvement of polyphenol profiles and flavour of wine.葡萄内生真菌 CHS 和 4CL 基因在柚皮苷和白藜芦醇生产及改善葡萄酒多酚谱和风味中的潜在应用。
Food Chem. 2021 Jun 15;347:128972. doi: 10.1016/j.foodchem.2020.128972. Epub 2021 Jan 1.
6
An in-silico evaluation of different bioactive molecules of tea for their inhibition potency against non structural protein-15 of SARS-CoV-2.基于计算机模拟评估茶叶中不同生物活性分子对 SARS-CoV-2 非结构蛋白 15 的抑制潜力。
Food Chem. 2021 Jun 1;346:128933. doi: 10.1016/j.foodchem.2020.128933. Epub 2020 Dec 28.
7
Virtual Screening of Natural Products Database.天然产物数据库的虚拟筛选。
Mini Rev Med Chem. 2021;21(18):2657-2730. doi: 10.2174/1389557520666200730161549.
8
Identification of bioactive molecules from tea plant as SARS-CoV-2 main protease inhibitors.从茶树中鉴定出作为新型冠状病毒主要蛋白酶抑制剂的生物活性分子。
J Biomol Struct Dyn. 2021 Jul;39(10):3449-3458. doi: 10.1080/07391102.2020.1766572. Epub 2020 May 20.
9
Comprehensive study of the genes involved in chlorophyll synthesis and degradation pathways in some monocot and dicot plant species.对一些单子叶和双子叶植物物种中涉及叶绿素合成和降解途径的基因进行综合研究。
J Biomol Struct Dyn. 2021 Apr;39(7):2387-2414. doi: 10.1080/07391102.2020.1748717. Epub 2020 Apr 15.
10
Metabolite profiling reveals a complex response of plants to application of plant growth-promoting endophytic bacteria.代谢物谱分析揭示了植物对应用促进植物生长的内生细菌的复杂反应。
Microbiol Res. 2020 Apr;234:126421. doi: 10.1016/j.micres.2020.126421. Epub 2020 Jan 25.