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新的蓝细菌属 Argonema 隐藏在世界各地的土壤结皮中。

New cyanobacterial genus Argonema is hidding in soil crusts around the world.

机构信息

Department of Botany, Faculty of Science, Palacký University Olomouc, Šlechtitelů 27, 783 71, Olomouc, Czech Republic.

出版信息

Sci Rep. 2022 May 3;12(1):7203. doi: 10.1038/s41598-022-11288-4.

Abstract

Cyanobacteria are crucial primary producers in soil and soil crusts. However, their biodiversity in these habitats remains poorly understood, especially in the tropical and polar regions. We employed whole genome sequencing, morphology, and ecology to describe a novel cyanobacterial genus Argonema isolated from Antarctica. Extreme environments are renowned for their relatively high number of endemic species, but whether cyanobacteria are endemic or not is open to much current debate. To determine if a cyanobacterial lineage is endemic is a time consuming, elaborate, and expensive global sampling effort. Thus, we propose an approach that will help to overcome the limits of the sampling effort and better understand the global distribution of cyanobacterial clades. We employed a Sequencing Read Archive, which provides a rich source of data from thousands of environmental samples. We developed a framework for a characterization of the global distribution of any microbial species using Sequencing Read Archive. Using this approach, we found that Argonema is actually cosmopolitan in arid regions. It provides further evidence that endemic microbial taxa are likely to be much rarer than expected.

摘要

蓝藻是土壤和土壤结皮中至关重要的初级生产者。然而,它们在这些生境中的生物多样性仍然知之甚少,特别是在热带和极地地区。我们采用全基因组测序、形态学和生态学方法,从南极洲分离出一种新型蓝藻属 Argonema。极端环境以其相对较高数量的特有物种而闻名,但蓝藻是否为特有种仍存在很大争议。要确定蓝藻谱系是否为特有种,需要进行耗时、复杂且昂贵的全球采样工作。因此,我们提出了一种方法,以帮助克服采样工作的限制,更好地了解蓝藻类群的全球分布。我们利用测序存档(Sequencing Read Archive),这是一个从数千个环境样本中获取丰富数据的资源。我们开发了一个使用测序存档来描述任何微生物物种全球分布的框架。使用这种方法,我们发现 Argonema 在干旱地区实际上是世界性的。这进一步证明了特有微生物类群可能比预期的要罕见得多。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c09/9065122/c94421f37f8e/41598_2022_11288_Fig1_HTML.jpg

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