Department of Microbiology, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Turkey.
Medical Microbiology Clinic, Şişli Hamidiye Etfal Training and Research Hospital, University of Health Sciences, 34371 Istanbul, Turkey.
Int J Syst Evol Microbiol. 2022 May;72(5). doi: 10.1099/ijsem.0.005338.
Eleven Gram-negative, curved and S-shaped, oxidase activity positive, catalase activity negative bacterial isolates recovered from faeces of Anatolian ground squirrel () in the city of Kayseri, Turkey, were subjected to a polyphasic taxonomic study. Results of a genus-specific PCR revealed that these isolates belonged to the genus . The 16S rRNA gene sequence analysis revealed that the 11 isolates had over 99 % sequence identity with each other and were most closely related to CMRI H02 with 97.0-97.1 % identity levels and they formed a novel phylogenetic line within the genus . Faydin-H64 and Faydin-H70 strains were subjected to A and A gene and whole genome sequence analyses. These two strains formed separate phylogenetic clades, divergent from other known species. The DNA G+C content and genome size of the strain Faydin-H70 were 35.3 mol% and 1.7 Mb, respectively. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain Faydin-H70 and its close phylogenetic neighbour ATCC BAA-430 were determined as 81.7 and 34.9 %, respectively. Pairwise sequence comparison showed that it was closely related to CMRI H02 however it shared the highest ANI and dDDH values with ATCC BAA-430. The data obtained from the polyphasic taxonomy approach, including phenotypic characterization and whole-genome sequences, revealed that these strains represent a novel species within the genus , for which the name sp. nov., is proposed with Faydin-H70 as the type strain (=DSM 112556=LMG 32335).
从土耳其开塞利市安纳托利亚地松鼠的粪便中分离出的 11 株革兰氏阴性、弯曲呈 S 形、氧化酶活性阳性、过氧化氢酶活性阴性的细菌分离株,进行了多相分类学研究。属特异性 PCR 结果显示,这些分离株属于 属。16S rRNA 基因序列分析表明,这 11 个分离株彼此之间的序列相似度超过 99%,与 CMRI H02 的相似度最高,相似度水平为 97.0-97.1%,并且在属内形成了一个新的系统发育分支。Faydin-H64 和 Faydin-H70 菌株进行了 A 和 A 基因及全基因组序列分析。这两个 菌株形成了单独的系统发育分支,与其他已知的 物种不同。菌株 Faydin-H70 的 DNA G+C 含量和基因组大小分别为 35.3 mol%和 1.7 Mb。菌株 Faydin-H70 与其近缘种 ATCC BAA-430 的平均核苷酸同一性 (ANI) 和数字 DNA-DNA 杂交 (dDDH) 值分别为 81.7%和 34.9%。成对序列比较表明,它与 CMRI H02 密切相关,但与 ATCC BAA-430 共享最高的 ANI 和 dDDH 值。多相分类学方法获得的数据,包括表型特征和全基因组序列,表明这些菌株代表了 属内的一个新种,建议采用 sp. nov. 作为该新种的名称,其中 Faydin-H70 作为模式菌株(=DSM 112556=LMG 32335)。