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新种,属于 的一个新的过氧化氢酶阴性成员,从土耳其的安纳托利亚地松鼠()中分离得到。

sp. nov., a catalase-negative new member of the genus, isolated from Anatolian Ground Squirrel () in Turkey.

机构信息

Department of Microbiology, Faculty of Veterinary Medicine, Erciyes University, 38280, Kayseri, Turkey.

Medical Microbiology Clinic, Şişli Hamidiye Etfal Training and Research Hospital, University of Health Sciences, 34371 Istanbul, Turkey.

出版信息

Int J Syst Evol Microbiol. 2022 May;72(5). doi: 10.1099/ijsem.0.005338.

Abstract

Eleven Gram-negative, curved and S-shaped, oxidase activity positive, catalase activity negative bacterial isolates recovered from faeces of Anatolian ground squirrel () in the city of Kayseri, Turkey, were subjected to a polyphasic taxonomic study. Results of a genus-specific PCR revealed that these isolates belonged to the genus . The 16S rRNA gene sequence analysis revealed that the 11 isolates had over 99 % sequence identity with each other and were most closely related to CMRI H02 with 97.0-97.1 % identity levels and they formed a novel phylogenetic line within the genus . Faydin-H64 and Faydin-H70 strains were subjected to A and A gene and whole genome sequence analyses. These two strains formed separate phylogenetic clades, divergent from other known species. The DNA G+C content and genome size of the strain Faydin-H70 were 35.3 mol% and 1.7 Mb, respectively. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain Faydin-H70 and its close phylogenetic neighbour ATCC BAA-430 were determined as 81.7 and 34.9 %, respectively. Pairwise sequence comparison showed that it was closely related to CMRI H02 however it shared the highest ANI and dDDH values with ATCC BAA-430. The data obtained from the polyphasic taxonomy approach, including phenotypic characterization and whole-genome sequences, revealed that these strains represent a novel species within the genus , for which the name sp. nov., is proposed with Faydin-H70 as the type strain (=DSM 112556=LMG 32335).

摘要

从土耳其开塞利市安纳托利亚地松鼠的粪便中分离出的 11 株革兰氏阴性、弯曲呈 S 形、氧化酶活性阳性、过氧化氢酶活性阴性的细菌分离株,进行了多相分类学研究。属特异性 PCR 结果显示,这些分离株属于 属。16S rRNA 基因序列分析表明,这 11 个分离株彼此之间的序列相似度超过 99%,与 CMRI H02 的相似度最高,相似度水平为 97.0-97.1%,并且在属内形成了一个新的系统发育分支。Faydin-H64 和 Faydin-H70 菌株进行了 A 和 A 基因及全基因组序列分析。这两个 菌株形成了单独的系统发育分支,与其他已知的 物种不同。菌株 Faydin-H70 的 DNA G+C 含量和基因组大小分别为 35.3 mol%和 1.7 Mb。菌株 Faydin-H70 与其近缘种 ATCC BAA-430 的平均核苷酸同一性 (ANI) 和数字 DNA-DNA 杂交 (dDDH) 值分别为 81.7%和 34.9%。成对序列比较表明,它与 CMRI H02 密切相关,但与 ATCC BAA-430 共享最高的 ANI 和 dDDH 值。多相分类学方法获得的数据,包括表型特征和全基因组序列,表明这些菌株代表了 属内的一个新种,建议采用 sp. nov. 作为该新种的名称,其中 Faydin-H70 作为模式菌株(=DSM 112556=LMG 32335)。

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