Department of Epidemiology, Gillings School of Global Public Health, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Carolina Population Center, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Environ Health Perspect. 2022 May;130(5):55001. doi: 10.1289/EHP9098. Epub 2022 May 9.
Advances in technologies to measure a broad set of exposures have led to a range of exposome research efforts. Yet, these efforts have insufficiently integrated methods that incorporate genetic data to strengthen causal inference, despite evidence that many exposome-associated phenotypes are heritable. Objective: We demonstrate how integration of methods and study designs that incorporate genetic data can strengthen causal inference in exposomics research by helping address six challenges: reverse causation and unmeasured confounding, comprehensive examination of phenotypic effects, low efficiency, replication, multilevel data integration, and characterization of tissue-specific effects. Examples are drawn from studies of biomarkers and health behaviors, exposure domains where the causal inference methods we describe are most often applied. Discussion: Technological, computational, and statistical advances in genotyping, imputation, and analysis, combined with broad data sharing and cross-study collaborations, offer multiple opportunities to strengthen causal inference in exposomics research. Full application of these opportunities will require an expanded understanding of genetic variants that predict exposome phenotypes as well as an appreciation that the utility of genetic variants for causal inference will vary by exposure and may depend on large sample sizes. However, several of these challenges can be addressed through international scientific collaborations that prioritize data sharing. Ultimately, we anticipate that efforts to better integrate methods that incorporate genetic data will extend the reach of exposomics research by helping address the challenges of comprehensively measuring the exposome and its health effects across studies, the life course, and in varied contexts and diverse populations. https://doi.org/10.1289/EHP9098.
技术的进步使得能够广泛测量各种暴露因素,从而推动了一系列暴露组学研究。然而,这些研究在整合方法方面做得还不够充分,没有充分利用遗传数据来加强因果推断,尽管有证据表明许多与暴露组相关的表型是可遗传的。
我们通过整合纳入遗传数据的方法和研究设计来展示如何在暴露组学研究中加强因果推断,从而帮助解决以下六个挑战:反向因果关系和未测量的混杂、全面检查表型效应、效率低下、复制、多层次数据整合以及组织特异性效应的特征描述。这些例子取自生物标志物和健康行为的研究,这些领域是我们所描述的因果推断方法最常应用的领域。
基因分型、插补和分析方面的技术、计算和统计进展,加上广泛的数据共享和跨研究合作,为加强暴露组学研究中的因果推断提供了多个机会。要充分利用这些机会,需要更深入地了解可预测暴露组表型的遗传变异,同时还需要认识到遗传变异在因果推断中的作用因暴露因素而异,并且可能取决于较大的样本量。然而,通过国际科学合作,优先考虑数据共享,可以解决其中的一些挑战。最终,我们预计通过更好地整合纳入遗传数据的方法,将扩大暴露组学研究的范围,有助于解决在研究、生命过程中以及在不同背景和不同人群中全面测量暴露组及其健康影响的挑战。