• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

网络对网络的概念为宿主- SARS-CoV-2 蛋白相互作用和开发抗病毒药物的潜在新靶点提供了新的见解。

Network for network concept offers new insights into host- SARS-CoV-2 protein interactions and potential novel targets for developing antiviral drugs.

机构信息

Department of Basic Sciences, School of Veterinary Medicine, Shahid Bahonar University of Kerman, Kerman, Iran.

Nuclear Agriculture Research School, Nuclear Science and Technology Research Institute (NSTRI), Karaj, Iran.

出版信息

Comput Biol Med. 2022 Jul;146:105575. doi: 10.1016/j.compbiomed.2022.105575. Epub 2022 Apr 30.

DOI:10.1016/j.compbiomed.2022.105575
PMID:35533462
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9055686/
Abstract

SARS-CoV-2, the causal agent of COVID-19, is primarily a pulmonary virus that can directly or indirectly infect several organs. Despite many studies carried out during the current COVID-19 pandemic, some pathological features of SARS-CoV-2 have remained unclear. It has been recently attempted to address the current knowledge gaps on the viral pathogenicity and pathological mechanisms via cellular-level tropism of SARS-CoV-2 using human proteomics, visualization of virus-host protein-protein interactions (PPIs), and enrichment analysis of experimental results. The synergistic use of models and methods that rely on graph theory has enabled the visualization and analysis of the molecular context of virus/host PPIs. We review current knowledge on the SARS-COV-2/host interactome cascade involved in the viral pathogenicity through the graph theory concept and highlight the hub proteins in the intra-viral network that create a subnet with a small number of host central proteins, leading to cell disintegration and infectivity. Then we discuss the putative principle of the "gene-for-gene and "network for network" concepts as platforms for future directions toward designing efficient anti-viral therapies.

摘要

严重急性呼吸综合征冠状病毒 2(SARS-CoV-2)是引发 COVID-19 的病原体,主要是一种肺部病毒,可直接或间接感染多个器官。尽管在当前的 COVID-19 大流行期间进行了许多研究,但 SARS-CoV-2 的一些病理学特征仍不清楚。最近,人们试图通过使用人类蛋白质组学来研究 SARS-CoV-2 的细胞水平趋向性、病毒-宿主蛋白-蛋白相互作用(PPI)的可视化以及对实验结果的富集分析,来解决当前关于病毒致病性和病理机制的知识空白。协同使用基于图论的模型和方法,使病毒/宿主 PPI 的分子上下文的可视化和分析成为可能。我们通过图论概念回顾了 SARS-CoV-2/宿主相互作用组级联反应在病毒致病性中的现有知识,并强调了病毒网络内的枢纽蛋白,这些蛋白形成了一个具有少数宿主中央蛋白的子网,导致细胞解体和感染性。然后,我们讨论了“基因对基因”和“网络对网络”概念的假设原理,作为设计高效抗病毒治疗方法的未来方向的平台。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/b3a8c59dc95d/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/1e55b6861aba/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/3a1008afb956/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/7d9760ee60c3/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/4b06beefd494/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/2a3372a2d2ed/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/b3a8c59dc95d/gr6_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/1e55b6861aba/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/3a1008afb956/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/7d9760ee60c3/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/4b06beefd494/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/2a3372a2d2ed/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cf7a/9055686/b3a8c59dc95d/gr6_lrg.jpg

相似文献

1
Network for network concept offers new insights into host- SARS-CoV-2 protein interactions and potential novel targets for developing antiviral drugs.网络对网络的概念为宿主- SARS-CoV-2 蛋白相互作用和开发抗病毒药物的潜在新靶点提供了新的见解。
Comput Biol Med. 2022 Jul;146:105575. doi: 10.1016/j.compbiomed.2022.105575. Epub 2022 Apr 30.
2
SARS-CoV-2-host proteome interactions for antiviral drug discovery.SARS-CoV-2 宿主蛋白组与抗病毒药物发现的相互作用。
Mol Syst Biol. 2021 Nov;17(11):e10396. doi: 10.15252/msb.202110396.
3
Generic model to unravel the deeper insights of viral infections: an empirical application of evolutionary graph coloring in computational network biology.通用模型揭示病毒感染的更深层次见解:进化图着色在计算网络生物学中的实证应用。
BMC Bioinformatics. 2024 Feb 16;25(1):74. doi: 10.1186/s12859-024-05690-0.
4
Discovery of host-directed modulators of virus infection by probing the SARS-CoV-2-host protein-protein interaction network.通过探测 SARS-CoV-2 宿主蛋白-蛋白相互作用网络发现宿主定向的病毒感染调节剂。
Brief Bioinform. 2022 Nov 19;23(6). doi: 10.1093/bib/bbac456.
5
Emergence, Transmission, and Potential Therapeutic Targets for the COVID-19 Pandemic Associated with the SARS-CoV-2.与严重急性呼吸综合征冠状病毒2(SARS-CoV-2)相关的2019冠状病毒病大流行的出现、传播及潜在治疗靶点
Cell Physiol Biochem. 2020 Aug 25;54(4):767-790. doi: 10.33594/000000254.
6
Analysis of the SARS-CoV-2-host protein interaction network reveals new biology and drug candidates: focus on the spike surface glycoprotein and RNA polymerase.分析 SARS-CoV-2 与宿主蛋白相互作用网络揭示了新的生物学和药物靶点:重点关注刺突表面糖蛋白和 RNA 聚合酶。
Expert Opin Drug Discov. 2021 Aug;16(8):881-895. doi: 10.1080/17460441.2021.1909566. Epub 2021 Apr 6.
7
Quantitative proteomics reveals a broad-spectrum antiviral property of ivermectin, benefiting for COVID-19 treatment.定量蛋白质组学揭示了伊维菌素的广谱抗病毒特性,有利于 COVID-19 的治疗。
J Cell Physiol. 2021 Apr;236(4):2959-2975. doi: 10.1002/jcp.30055. Epub 2020 Sep 22.
8
Molecular Insights of SARS-CoV-2 Infection and Molecular Treatments.SARS-CoV-2 感染的分子机制与分子治疗。
Curr Mol Med. 2022;22(7):621-639. doi: 10.2174/1566524021666211013121831.
9
Comprehensive Analysis of SARS-COV-2 Drug Targets and Pharmacological Aspects in Treating the COVID-19.全面分析 SARS-CoV-2 药物靶点及治疗 COVID-19 的药理学作用
Curr Mol Pharmacol. 2022;15(2):393-417. doi: 10.2174/1874467214666210811120635.
10
Lung disease network reveals impact of comorbidity on SARS-CoV-2 infection and opportunities of drug repurposing.肺病网络揭示了合并症对 SARS-CoV-2 感染的影响和药物再利用的机会。
BMC Med Genomics. 2021 Sep 17;14(1):226. doi: 10.1186/s12920-021-01079-7.

引用本文的文献

1
Integrated gene network analysis and experimental validation identify key hub genes in potato response to Potato Virus Y infection.整合基因网络分析与实验验证确定了马铃薯对马铃薯Y病毒感染反应中的关键枢纽基因。
PLoS One. 2025 Aug 14;20(8):e0329747. doi: 10.1371/journal.pone.0329747. eCollection 2025.
2
Priority index for critical Covid-19 identifies clinically actionable targets and drugs.新冠肺炎危重症优先指标确定了具有临床可操作性的目标和药物。
Commun Biol. 2024 Feb 16;7(1):189. doi: 10.1038/s42003-024-05897-0.
3
In silico drug repurposing carvedilol and its metabolites against SARS-CoV-2 infection using molecular docking and molecular dynamic simulation approaches.

本文引用的文献

1
Predicted coronavirus Nsp5 protease cleavage sites in the human proteome.预测人类蛋白质组中冠状病毒 Nsp5 蛋白酶的切割位点。
BMC Genom Data. 2022 Apr 4;23(1):25. doi: 10.1186/s12863-022-01044-y.
2
Highlight of potential impact of new viral genotypes of SARS-CoV-2 on vaccines and anti-viral therapeutics.严重急性呼吸综合征冠状病毒2(SARS-CoV-2)新病毒基因型对疫苗和抗病毒治疗潜在影响的亮点。
Gene Rep. 2022 Mar;26:101537. doi: 10.1016/j.genrep.2022.101537. Epub 2022 Feb 2.
3
Emergence of unique SARS-CoV-2 ORF10 variants and their impact on protein structure and function.
计算机药物再利用卡维地洛及其代谢物抗 SARS-CoV-2 感染的分子对接和分子动力学模拟研究。
Sci Rep. 2023 Dec 4;13(1):21404. doi: 10.1038/s41598-023-48398-6.
4
Strategies and Trends in COVID-19 Vaccination Delivery: What We Learn and What We May Use for the Future.2019冠状病毒病疫苗接种策略与趋势:我们学到了什么以及未来可能会用到什么。
Vaccines (Basel). 2023 Sep 16;11(9):1496. doi: 10.3390/vaccines11091496.
5
Analysis of age-dependent gene-expression in human tissues for studying diabetes comorbidities.分析人类组织中与年龄相关的基因表达,以研究糖尿病合并症。
Sci Rep. 2023 Jun 26;13(1):10372. doi: 10.1038/s41598-023-37550-x.
6
Ghosts of the past: Elemental composition, biosynthesis reactions and thermodynamic properties of Zeta P.2, Eta B.1.525, Theta P.3, Kappa B.1.617.1, Iota B.1.526, Lambda C.37 and Mu B.1.621 variants of SARS-CoV-2.过去的幽灵:新冠病毒Zeta P.2、Eta B.1.525、Theta P.3、Kappa B.1.617.1、Iota B.1.526、Lambda C.37和Mu B.1.621变体的元素组成、生物合成反应及热力学性质
Microb Risk Anal. 2023 Aug;24:100263. doi: 10.1016/j.mran.2023.100263. Epub 2023 May 20.
7
Systematic Guidelines for Effective Utilization of COVID-19 Databases in Genomic, Epidemiologic, and Clinical Research.系统指南:有效利用 COVID-19 数据库进行基因组学、流行病学和临床研究。
Viruses. 2023 Mar 6;15(3):692. doi: 10.3390/v15030692.
8
Structural analysis of SARS-CoV-2 Spike protein variants through graph embedding.通过图嵌入对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)刺突蛋白变体进行结构分析。
Netw Model Anal Health Inform Bioinform. 2023;12(1):3. doi: 10.1007/s13721-022-00397-9. Epub 2022 Dec 2.
新型严重急性呼吸综合征冠状病毒2(SARS-CoV-2)开放阅读框10(ORF10)变体的出现及其对蛋白质结构和功能的影响。
Int J Biol Macromol. 2022 Jan 1;194:128-143. doi: 10.1016/j.ijbiomac.2021.11.151. Epub 2021 Dec 2.
4
Large scale discovery of coronavirus-host factor protein interaction motifs reveals SARS-CoV-2 specific mechanisms and vulnerabilities.大规模发现冠状病毒-宿主因子蛋白相互作用基序揭示了 SARS-CoV-2 的特有机制和弱点。
Nat Commun. 2021 Nov 19;12(1):6761. doi: 10.1038/s41467-021-26498-z.
5
Comparison of viral RNA-host protein interactomes across pathogenic RNA viruses informs rapid antiviral drug discovery for SARS-CoV-2.比较致病性 RNA 病毒的病毒 RNA-宿主蛋白互作组,为 SARS-CoV-2 的快速抗病毒药物发现提供信息。
Cell Res. 2022 Jan;32(1):9-23. doi: 10.1038/s41422-021-00581-y. Epub 2021 Nov 4.
6
Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure.通过病毒基因组学和结构分析探讨严重急性呼吸综合征冠状病毒2(SARS-CoV-2)的发病机制、症状学及传播途径
mSystems. 2021 Oct 26;6(5):e0009521. doi: 10.1128/mSystems.00095-21.
7
COVIDrugNet: a network-based web tool to investigate the drugs currently in clinical trial to contrast COVID-19.COVIDrugNet:一个基于网络的网络工具,用于调查目前正在临床试验中的治疗 COVID-19 的药物。
Sci Rep. 2021 Sep 30;11(1):19426. doi: 10.1038/s41598-021-98812-0.
8
Exploiting the molecular basis of age and gender differences in outcomes of SARS-CoV-2 infections.探究新冠病毒感染结果中年龄和性别差异的分子基础。
Comput Struct Biotechnol J. 2021;19:4092-4100. doi: 10.1016/j.csbj.2021.07.002. Epub 2021 Jul 10.
9
Knowledge Graph-Based Approaches to Drug Repurposing for COVID-19.基于知识图谱的新冠病毒药物再利用方法。
J Chem Inf Model. 2021 Aug 23;61(8):4058-4067. doi: 10.1021/acs.jcim.1c00642. Epub 2021 Jul 23.
10
The SARS-CoV-2 Nucleocapsid Protein and Its Role in Viral Structure, Biological Functions, and a Potential Target for Drug or Vaccine Mitigation.新型冠状病毒核衣壳蛋白及其在病毒结构、生物学功能中的作用,以及作为药物或疫苗缓解的潜在靶点。
Viruses. 2021 Jun 10;13(6):1115. doi: 10.3390/v13061115.