Zelentsova Ekaterina A, Yanshole Vadim V, Tsentalovich Yuri P
International Tomography Center SB RAS Institutskaya 3a Novosibirsk 630090 Russia
Novosibirsk State University Pirogova 2 Novosibirsk 630090 Russia.
RSC Adv. 2019 Nov 20;9(65):37809-37817. doi: 10.1039/c9ra06808b. eCollection 2019 Nov 19.
Quantitative metabolomics places high demands on sample preparation, including a high degree of metabolite extraction and controlled sample weight. In respect to elastic collagen-rich tissues, the existing methods of sample homogenization poorly fit these demands due to incomplete homogenization, sample material loss, or metabolite degradation. Herein, a novel method based on the use of a microtome-cryostat apparatus is proposed. The performance of the cryotome method is compared with the results obtained with the use of a vortex bead beating. NMR-based metabolomic analysis shows that the extraction efficiency and the data scattering for both methods of sample preparation are similar. However, the heat generation during the bead beating causes the destruction of thermally-unstable compounds; besides, it may cause protein hydrolysis, leading to an artificial increase in the amino acid level. The cryotome method of sample homogenization does not cause sample heating, and it seems to be ideal for elastic tissues.
定量代谢组学对样品制备有很高的要求,包括高度的代谢物提取和可控的样品重量。对于富含弹性胶原蛋白的组织,现有的样品匀浆方法由于匀浆不完全、样品材料损失或代谢物降解,难以满足这些要求。在此,提出了一种基于使用切片机-低温恒温器装置的新方法。将冷冻切片法的性能与使用涡旋珠磨法获得的结果进行了比较。基于核磁共振的代谢组学分析表明,两种样品制备方法的提取效率和数据离散度相似。然而,珠磨过程中产生的热量会导致热不稳定化合物的破坏;此外,它可能会导致蛋白质水解,导致氨基酸水平人为升高。冷冻切片法进行样品匀浆不会导致样品升温,似乎是弹性组织的理想方法。