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新属,新种,从玉米根际分离得到。

gen. nov., sp. nov., isolated from maize root rhizosphere.

作者信息

Kämpfer Peter, Glaeser Stefanie P, Busse Hans-Jürgen, McInroy John A, Clermont Dominique, Criscuolo Alexis

机构信息

Institut für Angewandte Mikrobiologie, Universität Giessen, Giessen, Germany.

Institut für Mikrobiologie, Veterinärmedizinische Universität, A-1210 Wien, Austria.

出版信息

Int J Syst Evol Microbiol. 2022 May;72(5). doi: 10.1099/ijsem.0.005367.

Abstract

A facultative anaerobic, Gram-stain-positive, endospore-forming bacterium, isolated from the rhizosphere of maize roots (), was taxonomically studied. Based on 16S rRNA gene sequence similarity comparisons, strain JJ-79 clustered only loosely with species and showed the highest similarity to (97.9%). The 16S rRNA gene sequence similarities to the sequences of the type strains of other species were 97.5 % and below. Chemotaxonomic features supported the grouping of the strain to the group, e.g. the major fatty acids were C anteiso, C iso and C, the polar lipid profile contained the major components diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and an unidentified glycolipid, the major quinone was menaquinone MK-7, and major compound in the polyamine pattern was spermidine. However, the JJ-79 genome assembly did not share most of the 11 conserved signature indels that are indicative of the genus . The average nucleotide identity, average amino acid identity and digital DNA-DNA hybridization values between the JJ-79 genome assembly and those of the closest relative type strains were <71, <71 and <25 %, respectively. Physiological and biochemical test results were also different from those of the most closely related species. As a consequence, JJ-79 represents a novel genus for which we propose the name gen. nov., sp. nov., with JJ-79 (=CIP 111885=CCM 9045) as the type strain.

摘要

从玉米根际()分离出的一株兼性厌氧、革兰氏染色阳性、产芽孢细菌,进行了分类学研究。基于16S rRNA基因序列相似性比较,菌株JJ - 79仅与物种松散聚类,与(97.9%)显示出最高相似性。与其他物种模式菌株序列的16S rRNA基因序列相似性为97.5%及以下。化学分类特征支持将该菌株归入组,例如主要脂肪酸为anteiso - C、iso - C和C,极性脂质谱包含主要成分二磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺和一种未鉴定的糖脂,主要醌为甲基萘醌MK - 7,多胺模式中的主要化合物为亚精胺。然而,JJ - 79基因组组装未共享指示该属的11个保守特征插入缺失中的大多数。JJ - 79基因组组装与最密切相关的模式菌株之间的平均核苷酸同一性、平均氨基酸同一性和数字DNA - DNA杂交值分别<71%、<71%和<25%。生理生化测试结果也与最密切相关的物种不同。因此,JJ - 79代表一个新属,我们提议将其命名为gen. nov., sp. nov.,以JJ - 79(=CIP 111885 =CCM 9045)作为模式菌株。

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