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鉴定、系统发育和表达分析揭示了 基因家族在响应器官和多种非生物胁迫中的可能功能。

Identification, Phylogenetic and Expression Analyses of the Gene Family in Reveal Their Putative Functions in Response to Organ and Multiple Abiotic Stresses.

机构信息

Co-Innovation Center for Sustainable Forestry in Southern China, Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing 210037, China.

College of Horticulture Technology, Suzhou Polytechnic Institute of Agriculture, Suzhou 215000, China.

出版信息

Int J Mol Sci. 2022 Apr 26;23(9):4765. doi: 10.3390/ijms23094765.

DOI:10.3390/ijms23094765
PMID:35563155
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9100865/
Abstract

In this study, 52 genes were identified in the genome and divided into eight subgroups based on phylogenetic relationships, gene structure, and conserved motif. A total of 48 genes were located on the 14 chromosomes, and the remaining four genes were mapped in the contigs. Multispecies phylogenetic tree and codon usage bias analysis show that the gene family is closer to the of , indicating that the gene family is relatively primitive in angiosperms. Gene duplication events revealed six pairs of segmental duplications and one pair of tandem duplications, in which many paralogous genes diverged in function before monocotyledonous and dicotyledonous plants differentiation and were strongly purification selected. Gene expression pattern analysis showed that the gene plays a certain role in the development of nectary and somatic embryogenesis. Low temperature, drought, and heat stresses may activate some transcription factors to positively regulate the expression of genes to achieve long-distance transport of amino acids in plants to resist the unfavorable external environment. In addition, the and subgroups could involve gamma-aminobutyric acid (GABA) transport under aluminum poisoning. These findings could lay a solid foundation for further study of the biological role of and improvement of the stress resistance of .

摘要

在这项研究中,从基因组中鉴定出 52 个基因,并根据系统发育关系、基因结构和保守基序将它们分为 8 个亚组。共有 48 个基因定位在 14 条染色体上,其余 4 个基因定位在 contigs 中。多物种系统发育树和密码子使用偏性分析表明,该基因家族与 的亲缘关系更近,表明该基因家族在被子植物中相对原始。基因复制事件揭示了 6 对片段复制和 1 对串联复制,其中许多功能分化的同源基因在单子叶植物和双子叶植物分化之前就已经发生了分化,并受到强烈的纯化选择。基因表达模式分析表明,基因在蜜腺和体细胞胚胎发生的发育中发挥一定作用。低温、干旱和热胁迫可能会激活一些 转录因子,从而正向调节 基因的表达,使植物中的氨基酸能够进行远距离运输,以抵抗不利的外部环境。此外,和 亚组可能涉及到铝毒害下的γ-氨基丁酸(GABA)运输。这些发现为进一步研究 基因的生物学功能和提高 基因的抗胁迫能力奠定了基础。

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