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PSD95-PDZ3 的高温可逆寡聚化和淀粉样变性的反向工程分析。

Reverse Engineering Analysis of the High-Temperature Reversible Oligomerization and Amyloidogenicity of PSD95-PDZ3.

机构信息

Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 2-24-16, Naka-cho, Koganei-shi 184-8588, Tokyo, Japan.

Institute of Global Innovation Research, Tokyo University of Agriculture and Technology, 3-8-1, Harumi-cho, Fuchu-shi 183-8538, Tokyo, Japan.

出版信息

Molecules. 2022 Apr 28;27(9):2813. doi: 10.3390/molecules27092813.

DOI:10.3390/molecules27092813
PMID:35566161
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9103278/
Abstract

PSD95-PDZ3, the third PDZ domain of the post-synaptic density-95 protein (MW 11 kDa), undergoes a peculiar three-state thermal denaturation (N ↔ In ↔ D) and is amyloidogenic. PSD95-PDZ3 in the intermediate state (I) is reversibly oligomerized (RO: Reversible oligomerization). We previously reported a point mutation (F340A) that inhibits both ROs and amyloidogenesis and constructed the PDZ3-F340A variant. Here, we “reverse engineered” PDZ3-F340A for inducing high-temperature RO and amyloidogenesis. We produced three variants (R309L, E310L, and N326L), where we individually mutated hydrophilic residues exposed at the surface of the monomeric PDZ3-F340A but buried in the tetrameric crystal structure to a hydrophobic leucine. Differential scanning calorimetry indicated that two of the designed variants (PDZ3-F340A/R309L and E310L) denatured according to the two-state model. On the other hand, PDZ3-F340A/N326L denatured according to a three-state model and produced high-temperature ROs. The secondary structures of PDZ3-F340A/N326L and PDZ3-wt in the RO state were unfolded according to circular dichroism and differential scanning calorimetry. Furthermore, PDZ3-F340A/N326L was amyloidogenic as assessed by Thioflavin T fluorescence. Altogether, these results demonstrate that a single amino acid mutation can trigger the formation of high-temperature RO and concurrent amyloidogenesis.

摘要

PSD95-PDZ3,即突触后密度蛋白 95 的第三 PDZ 结构域(MW11kDa),经历了一种特殊的三态热变性(N↔In↔D),并具有淀粉样特性。中间状态(I)的 PSD95-PDZ3 是可逆寡聚化的(RO:可逆寡聚化)。我们之前报道了一个点突变(F340A),它可以同时抑制 RO 和淀粉样变性,并构建了 PDZ3-F340A 变体。在这里,我们“反向工程”了 PDZ3-F340A,以诱导高温 RO 和淀粉样变性。我们产生了三个变体(R309L、E310L 和 N326L),分别突变了单体 PDZ3-F340A 表面暴露的亲水残基,但在四聚体晶体结构中这些残基是埋藏的,突变为疏水性亮氨酸。差示扫描量热法表明,设计的两个变体(PDZ3-F340A/R309L 和 E310L)根据二态模型变性。另一方面,PDZ3-F340A/N326L 根据三态模型变性,并产生高温 RO。根据圆二色性和差示扫描量热法,RO 状态下的 PDZ3-F340A/N326L 和 PDZ3-wt 的二级结构是无规卷曲的。此外,PDZ3-F340A/N326L 具有淀粉样特性,这可以通过 Thioflavin T 荧光来评估。总之,这些结果表明,单个氨基酸突变可以触发高温 RO 的形成和同时发生的淀粉样变性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/5fc787e6451b/molecules-27-02813-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/6bd0884e21b7/molecules-27-02813-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/8b9bdd3d9414/molecules-27-02813-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/e0bbb5cd67d8/molecules-27-02813-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/3b943814244b/molecules-27-02813-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/372abbcf571c/molecules-27-02813-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/5fc787e6451b/molecules-27-02813-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/6bd0884e21b7/molecules-27-02813-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/8b9bdd3d9414/molecules-27-02813-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/e0bbb5cd67d8/molecules-27-02813-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/3b943814244b/molecules-27-02813-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/372abbcf571c/molecules-27-02813-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9b49/9103278/5fc787e6451b/molecules-27-02813-g006.jpg

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本文引用的文献

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2
ANS fluorescence: Potential to discriminate hydrophobic sites of proteins in solid states.ANS荧光:区分固态蛋白质疏水位点的潜力。
Biochem Biophys Rep. 2020 Nov 3;24:100843. doi: 10.1016/j.bbrep.2020.100843. eCollection 2020 Dec.
3
Thermodynamic Analysis of Point Mutations Inhibiting High-Temperature Reversible Oligomerization of PDZ3.
抑制PDZ3高温可逆寡聚化的点突变的热力学分析
Biophys J. 2020 Oct 6;119(7):1391-1401. doi: 10.1016/j.bpj.2020.08.023. Epub 2020 Aug 28.
4
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Biochemistry. 2020 Oct 6;59(39):3660-3668. doi: 10.1021/acs.biochem.0c00436. Epub 2020 Sep 22.
5
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Eur J Pharm Biopharm. 2020 Jul;152:164-174. doi: 10.1016/j.ejpb.2020.05.006. Epub 2020 May 19.
6
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