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2
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Polarizable Water Potential Derived from a Model Electron Density.由模型电子密度得出的可极化水势能。
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Nuclear Quantum Effects in Liquid Water at Near Classical Computational Cost Using the Adaptive Quantum Thermal Bath.使用自适应量子热浴以近经典计算成本研究液态水中的核量子效应。
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基于量子启发的 SIBFA 多体极化力场的开发:实现凝聚相分子动力学模拟。

Development of the Quantum-Inspired SIBFA Many-Body Polarizable Force Field: Enabling Condensed-Phase Molecular Dynamics Simulations.

机构信息

LCT, UMR 7616 CNRS, Sorbonne Université, 75005 Paris, France.

Department of Chemistry, University of North Texas, Denton, Texas 76201, United States.

出版信息

J Chem Theory Comput. 2022 Jun 14;18(6):3607-3621. doi: 10.1021/acs.jctc.2c00029. Epub 2022 May 16.

DOI:10.1021/acs.jctc.2c00029
PMID:35575306
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10851344/
Abstract

We present the extension of the Sum of Interactions Between Fragments Computed (SIBFA) many-body polarizable force field to condensed-phase molecular dynamics (MD) simulations. The quantum-inspired SIBFA procedure is grounded on simplified integrals obtained from localized molecular orbital theory and achieves full separability of its intermolecular potential. It embodies long-range multipolar electrostatics (up to quadrupole) coupled to a short-range penetration correction (up to charge-quadrupole), exchange repulsion, many-body polarization, many-body charge transfer/delocalization, exchange dispersion, and dispersion (up to C). This enables the reproduction of all energy contributions of symmetry-adapted perturbation theory (SAPT(DFT)) gas-phase reference computations. The SIBFA approach has been integrated within the Tinker-HP massively parallel MD package. To do so, all SIBFA energy gradients have been derived and the approach has been extended to enable periodic boundary conditions simulations using smooth particle mesh Ewald. This novel implementation also notably includes a computationally tractable simplification of the many-body charge transfer/delocalization contribution. As a proof of concept, we perform a first computational experiment defining a water model fitted on a limited set of SAPT(DFT) data. SIBFA is shown to enable a satisfactory reproduction of both gas-phase energetic contributions and condensed-phase properties highlighting the importance of its physically motivated functional form.

摘要

我们提出了将碎片间相互作用和计算总和(SIBFA)多体极化力场扩展到凝聚相分子动力学(MD)模拟。受量子启发的 SIBFA 程序基于简化的积分,这些积分是从局域分子轨道理论中获得的,并实现了其分子间势能的完全可分性。它体现了远程多极静电(高达四极)与短程穿透校正(高达电荷四极)、交换排斥、多体极化、多体电荷转移/离域、交换色散和色散(高达 C)相结合。这使得可以重现对称适应微扰理论(SAPT(DFT))气相参考计算的所有能量贡献。SIBFA 方法已集成在 Tinker-HP 大规模并行 MD 软件包中。为此,我们推导出了所有 SIBFA 能量梯度,并扩展了该方法以使用平滑粒子网格 Ewald 来实现周期性边界条件模拟。这种新的实现还显著包括对多体电荷转移/离域贡献的可计算简化。作为概念验证,我们进行了第一次计算实验,定义了一个适用于有限 SAPT(DFT)数据集的水模型。结果表明,SIBFA 能够令人满意地再现气相能量贡献和凝聚相性质,突出了其物理驱动的功能形式的重要性。