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Development of the Quantum-Inspired SIBFA Many-Body Polarizable Force Field: Enabling Condensed-Phase Molecular Dynamics Simulations.
J Chem Theory Comput. 2022 Jun 14;18(6):3607-3621. doi: 10.1021/acs.jctc.2c00029. Epub 2022 May 16.
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Polarizable molecular mechanics studies of Cu(I)/Zn(II) superoxide dismutase: bimetallic binding site and structured waters.
J Comput Chem. 2014 Nov 5;35(29):2096-106. doi: 10.1002/jcc.23724. Epub 2014 Sep 11.
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Predicting and Understanding Non-Covalent Interactions Using Novel Forms of Symmetry-Adapted Perturbation Theory.
Acc Chem Res. 2021 Oct 5;54(19):3679-3690. doi: 10.1021/acs.accounts.1c00387. Epub 2021 Sep 22.
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Polarizable molecular dynamics simulation of Zn(II) in water using the AMOEBA force field.
J Chem Theory Comput. 2010 Jul 13;6(7):2059-2070. doi: 10.1021/ct100091j.
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Improving Condensed-Phase Water Dynamics with Explicit Nuclear Quantum Effects: The Polarizable Q-AMOEBA Force Field.
J Phys Chem B. 2022 Nov 3;126(43):8813-8826. doi: 10.1021/acs.jpcb.2c04454. Epub 2022 Oct 21.

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Analyzing Many-Body Charge Transfer Effects With the Fragment Molecular Orbital Method.
J Comput Chem. 2025 May 15;46(13):e70128. doi: 10.1002/jcc.70128.
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What is the Exchange Repulsion Energy? Insight by Partitioning into Physically Meaningful Contributions.
Chemphyschem. 2025 Mar 3;26(5):e202400887. doi: 10.1002/cphc.202400887. Epub 2024 Dec 18.
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Toward Gaussian Process Regression Modeling of a Urea Force Field.
J Phys Chem A. 2024 Oct 3;128(39):8551-8560. doi: 10.1021/acs.jpca.4c04117. Epub 2024 Sep 20.
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Exploring Holy Basil's Bioactive Compounds for T2DM Treatment: Docking and Molecular Dynamics Simulations with Human Omentin-1.
Cell Biochem Biophys. 2025 Mar;83(1):793-810. doi: 10.1007/s12013-024-01511-6. Epub 2024 Sep 11.
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Hybrid Quantum Mechanical/Molecular Mechanical Methods For Studying Energy Transduction in Biomolecular Machines.
Annu Rev Biophys. 2023 May 9;52:525-551. doi: 10.1146/annurev-biophys-111622-091140. Epub 2023 Feb 15.
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Construction of a Gaussian Process Regression Model of Formamide for Use in Molecular Simulations.
J Phys Chem A. 2023 Feb 23;127(7):1702-1714. doi: 10.1021/acs.jpca.2c06566. Epub 2023 Feb 9.
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Application of Quantum Chemical Topology Force Field FFLUX to Condensed Matter Simulations: Liquid Water.
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本文引用的文献

1
Stochastic Evaluation of Many-Body van der Waals Energies in Large Complex Systems.
J Chem Theory Comput. 2022 Mar 8;18(3):1633-1645. doi: 10.1021/acs.jctc.1c01291. Epub 2022 Feb 8.
3
Polarizable Water Potential Derived from a Model Electron Density.
J Chem Theory Comput. 2021 Nov 9;17(11):7056-7084. doi: 10.1021/acs.jctc.1c00628. Epub 2021 Oct 26.
4
Nuclear Quantum Effects in Liquid Water at Near Classical Computational Cost Using the Adaptive Quantum Thermal Bath.
J Phys Chem Lett. 2021 Sep 2;12(34):8285-8291. doi: 10.1021/acs.jpclett.1c01722. Epub 2021 Aug 24.
5
Assessment of SAPT and Supermolecular EDA Approaches for the Development of Separable and Polarizable Force Fields.
J Chem Theory Comput. 2021 May 11;17(5):2759-2774. doi: 10.1021/acs.jctc.0c01337. Epub 2021 Apr 20.
7
Quantum-Chemistry Based Design of Halobenzene Derivatives With Augmented Affinities for the HIV-1 Viral G/C Base-Pair.
Front Chem. 2020 Jun 19;8:440. doi: 10.3389/fchem.2020.00440. eCollection 2020.
9
Accurate Biomolecular Simulations Account for Electronic Polarization.
Front Mol Biosci. 2019 Dec 4;6:143. doi: 10.3389/fmolb.2019.00143. eCollection 2019.
10
Implementation of Geometry-Dependent Charge Flux into the Polarizable AMOEBA+ Potential.
J Phys Chem Lett. 2020 Jan 16;11(2):419-426. doi: 10.1021/acs.jpclett.9b03489. Epub 2019 Dec 30.

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