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sp. nov.,分离自斯瓦尔巴群岛(北极地区)维斯蒂布罗格冰川的一个山谷冰川。

sp. nov., isolated from Vestrebroggerbreen, a valley glacier in Svalbard, Arctic.

机构信息

National Centre for Polar and Ocean Research, Ministry of Earth Sciences, Headland Sada, Vasco da Gama, Goa 403804, India.

School of Earth, Ocean and Atmospheric Sciences, Goa University, Taleigao Plateau Goa 403206, India.

出版信息

Int J Syst Evol Microbiol. 2022 May;72(5). doi: 10.1099/ijsem.0.005375.

Abstract

A Gram-stain-negative, rod-shaped bacterial strain designated as 20VBR1 was isolated from a valley glacier (Vestrebroggerbreen) snout ice sample from Ny-Ålesund, Svalbard, Arctic. The colonies were smooth, circular and light creamish on half-strength R2A agar and grew at 10-35 °C (optimum, 20 °C), at pH 6.5-8.0 (optimum, 7.0) and with 0-2.5 % (w/v) NaCl (optimum, 0.5 %). 16S rRNA gene sequence analysis revealed that strain 20VBR1 belonged to the genus and was most closely affiliated to W2-3-4 (97.65 % similarity), LMG 11050 (97.57 %) and Slu-01 (96.91 %). 20VBR1 has a genome size of 4.24 Mb, comprising 4185 predicted genes with a DNA G+C content of 67.86 mol%. DNA-DNA hybridization experiments indicated that the DNA-DNA relatedness between strain 20VBR1 and KACC 18306 was 41.95±4.36 %, well below the threshold (<70 %) to delineate bacterial species. Genome relatedness indexes revealed that the average nucleotide identity and digital DNA-DNA hybridization values between 20VBR1 and its closest phylogenomic relative, KACC 18306, were 78.97 and 22.10 %, respectively. The predominant isoprenoid quinone was ubiquinone (Q-10) and the major polar lipids were phosphatidylglycerol, one unknown phospholipid, one unknown glycolipid and four unidentified polar lipids. The major fatty acids (>10 %) of strain 20VBR1 were summed feature 8 (comprising C 7 and/or C 6c), summed feature 3 (comprising C 6 and/or C 7) and C. Based on the physiological, biochemical, chemotaxonomic, phylogenetic and phylogenomic analyses, isolate 20VBR1 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is 20VBR1 (=JCM 33227 =DSM 111428 =MCC 4220 ).

摘要

一株革兰氏阴性、杆状的细菌菌株 20VBR1 是从斯瓦尔巴群岛新奥尔松的一个山谷冰川(Vestrebroggerbreen)鼻冰样本中分离出来的。在半强度 R2A 琼脂上,菌落光滑、圆形、淡奶油色,在 10-35°C(最佳温度 20°C)、pH 值 6.5-8.0(最佳 pH 值 7.0)和 0-2.5%(w/v)NaCl(最佳 0.5%)的条件下生长。16S rRNA 基因序列分析表明,菌株 20VBR1 属于 属,与 W2-3-4(97.65%相似性)、LMG 11050(97.57%)和 Slu-01(96.91%)最为密切相关。20VBR1 的基因组大小为 4.24Mb,包含 4185 个预测基因,其 DNA G+C 含量为 67.86mol%。DNA-DNA 杂交实验表明,菌株 20VBR1 与 KACC 18306 的 DNA-DNA 相关性为 41.95±4.36%,远低于界定细菌种属的阈值(<70%)。基因组相关性指数表明,20VBR1 与其最接近的系统发育相关物 KACC 18306 的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 78.97%和 22.10%。主要的类异戊二烯醌是泛醌(Q-10),主要的极性脂是磷脂酰甘油、一种未知的磷脂、一种未知的糖脂和四种未知的极性脂。菌株 20VBR1 的主要脂肪酸(>10%)为 sumFeature8(包括 C7 和/或 C6c)、sumFeature3(包括 C6 和/或 C7)和 C。基于生理、生化、化学分类、系统发育和系统基因组学分析,分离株 20VBR1 被认为代表了 属的一个新种,因此建议将其命名为 sp. nov.。该模式株为 20VBR1(=JCM 33227=DSM 111428=MCC 4220)。

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