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sp. nov.,一种从北极海洋沉积物中分离出的细菌。

sp. nov., a bacterium isolated from Arctic marine sediment.

机构信息

China Center for Type Culture Collection (CCTCC), College of Life Sciences, Wuhan University, Wuhan 430072, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Mar;70(3):2072-2078. doi: 10.1099/ijsem.0.004018.

DOI:10.1099/ijsem.0.004018
PMID:32118527
Abstract

An aerobic, Gram-stain-negative, motile, rod or long-rod-shaped bacterial isolate, strain MK6-18, was isolated from a marine sediment sample from Kongsfjorden, Arctic. The bacterium grew optimally at 20 °C, pH 7.0 and in the presence of 1.0-2.0 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain MK6-18 belonged to the genus . Its closest phylogenetic neighbour was NH52J showing 96.97 % 16S rRNA gene sequence similarity. The genome of strain MK6-18 is 4.2 Mb long in size with a G+C content of 59.5 mol%. The average nucleotide identity value between the genomes of strain MK6-18 and NH52J, was 78.0 %. Similar to other species of the genus , strain MK6-18 had ubiquinone 10 as the predominant ubiquinone and C, C, summed feature 3 (Cω7cω6) and summed feature 8 (Cω7cω6) as the major fatty acids. The polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphatidylcholine; one unidentified polar lipid, one unidentified aminolipid and one unidentified lipid were also detected. This is the first time that a member of the genus has been isolated from the Arctic, which may promote the study of the distribution characteristics and environmental adaptability of this genus. On the basis of the data provided here, strain MK6-18 should be classed as representing a novel species of the genus , for which the name sp. nov. is proposed. The type strain is MK6-18 (=CCTCC AB 2018219=KCTC 72187).

摘要

一株好氧、革兰氏阴性、能动、杆状或长杆状的细菌分离株 MK6-18 是从 Kongsfjorden 北极海洋沉积物样本中分离出来的。该菌在 20°C、pH7.0 和 1.0-2.0%(w/v)NaCl 存在下生长最佳。基于 16S rRNA 基因序列的系统发育分析显示,菌株 MK6-18 属于 属。与其亲缘关系最近的菌株是 NH52J,两者 16S rRNA 基因序列相似性为 96.97%。菌株 MK6-18 的基因组大小为 4.2Mb,G+C 含量为 59.5mol%。MK6-18 菌株与 NH52J 菌株的基因组平均核苷酸同一性值为 78.0%。与该属的其他种类似,MK6-18 菌株的主要类脂醌为泛醌 10,主要脂肪酸为 C16:0、C16:1ω7c 和 C18:1ω7c。极性脂谱由二磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺和磷脂酰胆碱组成;还检测到一个未鉴定的极性脂、一个未鉴定的胺脂和一个未鉴定的脂。这是首次从北极分离出属的成员,这可能有助于研究该属的分布特征和环境适应性。根据这里提供的数据,菌株 MK6-18 应归类为代表该属的一个新种,提议将其命名为 sp. nov.。其模式菌株为 MK6-18(=CCTCC AB 2018219=KCTC 72187)。

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