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鉴定 PBK 作为成神经管细胞瘤的枢纽基因和潜在治疗靶点。

Identification of PBK as a hub gene and potential therapeutic target for medulloblastoma.

机构信息

Neurosurgery Center, Department of Pediatric Neurosurgery, Guangdong Provincial Key Laboratory on Brain Function Repair and Regeneration, Zhujiang Hospital, Southern Medical University, Guangzhou, Guangdong 510280, P.R. China.

Neurosurgery Center, Guangdong Provincial Key Laboratory on Brain Function Repair and Regeneration, Zhujiang Hospital, Southern Medical University, Guangzhou, Guangdong 510280, P.R. China.

出版信息

Oncol Rep. 2022 Jul;48(1). doi: 10.3892/or.2022.8336. Epub 2022 May 20.

Abstract

Medulloblastoma (MB) is the most frequent malignant brain tumor in pediatrics. Since the current standard of care for MB consisting of surgery, cranio‑spinal irradiation and chemotherapy often leads to a high morbidity rate, a number of patients suffer from long‑term sequelae following treatment. Targeted therapies hold the promise of being more effective and less toxic. Therefore, the present study aimed to identify hub genes with an upregulated expression in MB and to search for potential therapeutic targets from these genes. For this purpose, gene expression profile datasets were obtained from the Gene Expression Omnibus database and processed using R 3.6.0 software to screen differentially expressed genes (DEGs) between MB samples and normal brain tissues. A total of 282 upregulated and 436 downregulated DEGs were identified. Functional enrichment analysis revealed that the upregulated DEGs were predominantly enriched in the cell cycle, DNA replication and cell division. The top 10 hub genes were identified from the protein‑protein interaction network of upregulated genes, and one identified hub gene [PDZ binding kinase (PBK)] was selected for further investigation due to its possible role in the pathogenesis of MB. The aberrant expression of PBK in MB was verified in additional independent gene expression datasets. Survival analysis demonstrated that a higher expression level of PBK was significantly associated with poorer clinical outcomes in non‑Wingless MBs. Furthermore, targeting PBK with its inhibitor, HI‑TOPK‑032, impaired the proliferation and induced the apoptosis of two MB cell lines, with the diminished phosphorylation of downstream effectors of PBK, including ERK1/2 and Akt, and the activation of caspase‑3. Hence, these results suggest that PBK may be a potential prognostic biomarker and a novel candidate of targeted therapy for MB.

摘要

髓母细胞瘤(MB)是儿科最常见的恶性脑肿瘤。由于目前 MB 的治疗标准包括手术、颅脊髓照射和化疗,这往往会导致高发病率,许多患者在治疗后会出现长期的后遗症。靶向治疗有望更有效且毒性更小。因此,本研究旨在鉴定 MB 中上调表达的枢纽基因,并从这些基因中寻找潜在的治疗靶点。为此,从基因表达综合数据库中获取基因表达谱数据集,并使用 R 3.6.0 软件进行处理,以筛选 MB 样本和正常脑组织之间的差异表达基因(DEGs)。共鉴定出 282 个上调和 436 个下调的 DEGs。功能富集分析显示,上调的 DEGs 主要富集在细胞周期、DNA 复制和细胞分裂中。从上调基因的蛋白质-蛋白质相互作用网络中鉴定出前 10 个枢纽基因,并选择其中一个鉴定出的枢纽基因[PDZ 结合激酶(PBK)]进行进一步研究,因为其可能在 MB 的发病机制中发挥作用。在其他独立的基因表达数据集中验证了 MB 中 PBK 的异常表达。生存分析表明,PBK 的高表达水平与非 Wnt 型 MB 的不良临床结局显著相关。此外,用其抑制剂 HI-TOPK-032 靶向 PBK 可损害两种 MB 细胞系的增殖并诱导其凋亡,同时降低 PBK 的下游效应物(包括 ERK1/2 和 Akt)的磷酸化和 caspase-3 的激活。因此,这些结果表明 PBK 可能是 MB 的潜在预后生物标志物和靶向治疗的新候选药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f18/9164263/4c43b2dea909/or-48-01-08336-g00.jpg

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