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用于二维多目标检测的近似期望最大化算法

An approximate expectation-maximization for two-dimensional multi-target detection.

作者信息

Kreymer Shay, Singer Amit, Bendory Tamir

机构信息

School of Electrical Engineering of Tel Aviv University, Tel Aviv, Israel.

Department of Mathematics and PACM, Princeton University, Princeton, NJ, USA.

出版信息

IEEE Signal Process Lett. 2022;29:1087-1091. doi: 10.1109/lsp.2022.3167335. Epub 2022 Apr 13.

DOI:10.1109/lsp.2022.3167335
PMID:35601688
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9119315/
Abstract

We consider the two-dimensional multi-target detection (MTD) problem of estimating a target image from a noisy measurement that contains multiple copies of the image, each randomly rotated and translated. The MTD model serves as a mathematical abstraction of the structure reconstruction problem in single-particle cryo-electron microscopy, the chief motivation of this study. We focus on high noise regimes, where accurate detection of image occurrences within a measurement is impossible. To estimate the image, we develop an expectation-maximization framework that aims to maximize an approximation of the likelihood function. We demonstrate image recovery in highly noisy environments, and show that our framework outperforms the previously studied autocorrelation analysis in a wide range of parameters.

摘要

我们考虑二维多目标检测(MTD)问题,即从包含图像多个副本的噪声测量中估计目标图像,每个副本都经过随机旋转和平移。MTD模型是单颗粒冷冻电子显微镜中结构重建问题的数学抽象,也是本研究的主要动机。我们关注高噪声情况,在这种情况下,无法在测量中准确检测图像出现的位置。为了估计图像,我们开发了一个期望最大化框架,旨在最大化似然函数的近似值。我们展示了在高噪声环境下的图像恢复,并表明我们的框架在广泛的参数范围内优于先前研究的自相关分析。

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Toward Single Particle Reconstruction without Particle Picking: Breaking the Detection Limit.迈向无需粒子挑选的单粒子重建:突破检测极限。

本文引用的文献

1
MULTI-TARGET DETECTION WITH ROTATIONS.带旋转的多目标检测
Inverse Probl Imaging (Springfield). 2023 Apr;17(2):362-380. doi: 10.3934/ipi.2022046.
2
Toward Single Particle Reconstruction without Particle Picking: Breaking the Detection Limit.迈向无需粒子挑选的单粒子重建:突破检测极限。
SIAM J Imaging Sci. 2023;16(2):886-910. doi: 10.1137/22m1503828.
3
Computational Methods for Single-Particle Electron Cryomicroscopy.单颗粒电子冷冻显微镜的计算方法。
SIAM J Imaging Sci. 2023;16(2):886-910. doi: 10.1137/22m1503828.
Annu Rev Biomed Data Sci. 2020 Jul;3:163-190. doi: 10.1146/annurev-biodatasci-021020-093826. Epub 2020 May 4.
4
Multi-target Detection with an Arbitrary Spacing Distribution.具有任意间距分布的多目标检测
IEEE Trans Signal Process. 2020;68:1589-1601. doi: 10.1109/tsp.2020.2975943. Epub 2020 Feb 24.
5
Current limitations to high-resolution structure determination by single-particle cryoEM.单颗粒冷冻电镜用于高分辨率结构测定的当前局限性。
Q Rev Biophys. 2021 Mar 11;54:e4. doi: 10.1017/S0033583521000020.
6
Single-particle cryo-electron microscopy: Mathematical theory, computational challenges, and opportunities.单颗粒冷冻电子显微镜:数学理论、计算挑战与机遇
IEEE Signal Process Mag. 2020 Mar;37(2):58-76. doi: 10.1109/msp.2019.2957822. Epub 2020 Feb 27.
7
Bispectrum Inversion with Application to Multireference Alignment.应用于多参考对齐的双谱反演
IEEE Trans Signal Process. 2018 Feb 15;66(4):1037-1050. doi: 10.1109/TSP.2017.2775591. Epub 2017 Nov 20.
8
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.cryoSPARC:用于快速无监督低温电子显微镜结构测定的算法。
Nat Methods. 2017 Mar;14(3):290-296. doi: 10.1038/nmeth.4169. Epub 2017 Feb 6.
9
The development of cryo-EM into a mainstream structural biology technique.冷冻电镜发展成为一种主流的结构生物学技术。
Nat Methods. 2016 Jan;13(1):24-7. doi: 10.1038/nmeth.3694.
10
SubspaceEM: A fast maximum-a-posteriori algorithm for cryo-EM single particle reconstruction.子空间期望最大化算法:一种用于冷冻电镜单颗粒重建的快速最大后验概率算法。
J Struct Biol. 2015 May;190(2):200-14. doi: 10.1016/j.jsb.2015.03.009. Epub 2015 Mar 31.