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植物 G3BPs 的综合进化分析与命名。

Comprehensive evolutionary analysis and nomenclature of plant G3BPs.

机构信息

Biological Sciences Department, College of Science and Arts, King Abdulaziz University, Rabigh, Saudi Arabia.

Computational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.

出版信息

Life Sci Alliance. 2022 May 26;5(9). doi: 10.26508/lsa.202101328. Print 2022 Sep.

Abstract

Stress induces extensive reprogramming of mRNA metabolism, which includes the transcription and translation of stress-related genes and the formation of stress granules. RasGAP SH3 domain-binding proteins (G3BPs, also called Rasputins) form a highly conserved family of proteins found throughout eukaryotic evolution, which coordinate signal transduction and posttranscriptional gene regulation and play a key role in the formation of stress granules. G3BPs play a role in osmotic, oxidative, and biotic stress in mammals, and recent results revealed that they play similar functions in higher plants. Although simple eukaryotes such as yeast have only one gene, higher plants show a massive expansion of their genes into distinct subfamilies. However, because this family of genes has not been well-characterized in plants, functions that have evolved during this expansion remain unidentified. Therefore, we carried out a phylogenetic analysis of G3BPs in different eukaryotes, particularly focusing on the green lineage. On the basis of this evolutionary analysis of G3BPs in eukaryotes, we propose a uniform nomenclature for plant G3BPs that should help predict the evolutionary and functional diversification in this family.

摘要

压力会引起 mRNA 代谢的广泛重编程,包括应激相关基因的转录和翻译以及应激颗粒的形成。RasGAP SH3 结构域结合蛋白(G3BPs,也称为 Rasputin)是一个高度保守的蛋白家族,在真核生物进化过程中广泛存在,它们协调信号转导和转录后基因调控,并在应激颗粒的形成中发挥关键作用。G3BPs 在哺乳动物的渗透、氧化和生物应激中发挥作用,最近的研究结果表明,它们在高等植物中也具有类似的功能。尽管简单的真核生物(如酵母)只有一个 基因,但高等植物将其 基因大量扩展为不同的亚家族。然而,由于这个基因家族在植物中尚未得到很好的描述,因此在这个扩展过程中进化出的功能仍然未知。因此,我们对不同真核生物中的 G3BPs 进行了系统发育分析,特别是对绿色谱系进行了重点分析。基于对真核生物中 G3BPs 的进化分析,我们提出了一种植物 G3BPs 的统一命名法,这应该有助于预测该家族的进化和功能多样化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7519/9136153/20a884d563f4/LSA-2021-01328_FigS1.jpg

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