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环状 RNA 研究的最佳实践标准。

Best practice standards for circular RNA research.

机构信息

Interdisciplinary Nanoscience Center, Aarhus University, Aarhus, Denmark.

Center for Cellular Signal Patterns (CellPAT), Aarhus University, Aarhus, Denmark.

出版信息

Nat Methods. 2022 Oct;19(10):1208-1220. doi: 10.1038/s41592-022-01487-2. Epub 2022 May 26.

DOI:10.1038/s41592-022-01487-2
PMID:35618955
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9759028/
Abstract

Circular RNAs (circRNAs) are formed in all domains of life and via different mechanisms. There has been an explosion in the number of circRNA papers in recent years; however, as a relatively young field, circRNA biology has an urgent need for common experimental standards for isolating, analyzing, expressing and depleting circRNAs. Here we propose a set of guidelines for circRNA studies based on the authors' experience. This Perspective will specifically address the major class of circRNAs in Eukarya that are generated by a spliceosome-catalyzed back-splicing event. We hope that the implementation of best practice principles for circRNA research will help move the field forward and allow a better functional understanding of this fascinating group of RNAs.

摘要

环状 RNA(circRNAs)存在于所有生命领域,并通过不同的机制产生。近年来,环状 RNA 相关研究论文数量呈爆炸式增长;然而,作为一个相对较年轻的领域,环状 RNA 生物学迫切需要用于环状 RNA 分离、分析、表达和耗尽的通用实验标准。在这里,我们根据作者的经验提出了一套环状 RNA 研究指南。本观点将特别针对由剪接体催化的反向剪接事件产生的真核生物中主要的一类 circRNAs。我们希望环状 RNA 研究最佳实践原则的实施将有助于推动该领域的发展,并使人们能够更好地理解这组令人着迷的 RNA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/7709c72c2961/nihms-1852105-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/6dd7f1bea427/nihms-1852105-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/0d58f87c3fca/nihms-1852105-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/d93bfe8bdc05/nihms-1852105-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/7709c72c2961/nihms-1852105-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/6dd7f1bea427/nihms-1852105-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/0d58f87c3fca/nihms-1852105-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/d93bfe8bdc05/nihms-1852105-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76d0/9759028/7709c72c2961/nihms-1852105-f0004.jpg

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iScience. 2021 Nov 25;24(12):103504. doi: 10.1016/j.isci.2021.103504. eCollection 2021 Dec 17.
2
Structured elements drive extensive circular RNA translation.结构元件驱动广泛的环状 RNA 翻译。
Mol Cell. 2021 Oct 21;81(20):4300-4318.e13. doi: 10.1016/j.molcel.2021.07.042. Epub 2021 Aug 25.
3
Nanopore sequencing of brain-derived full-length circRNAs reveals circRNA-specific exon usage, intron retention and microexons.
Wiley Interdiscip Rev RNA. 2025 Jul-Aug;16(4):e70023. doi: 10.1002/wrna.70023.
4
Mining, validating, and quantifying circular RNA transcriptome from total RNA as a biomarker or target.从总RNA中挖掘、验证和定量环状RNA转录组作为生物标志物或靶点。
Sci Rep. 2025 Jul 1;15(1):20418. doi: 10.1038/s41598-025-05652-3.
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Role of long non-coding RNAs and circular RNAs in kawasaki disease: a systematic review.长链非编码RNA和环状RNA在川崎病中的作用:一项系统综述
Pediatr Rheumatol Online J. 2025 Jun 13;23(1):65. doi: 10.1186/s12969-025-01087-2.
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Circular RNAs inducing the osteogenic differentiation of dental mesenchymal stem cells microRNA sponging.环状RNA通过微小RNA海绵作用诱导牙间充质干细胞的成骨分化
World J Stem Cells. 2025 May 26;17(5):101638. doi: 10.4252/wjsc.v17.i5.101638.
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Circular RNAs as disease modifiers of complex neurologic disorders.环状RNA作为复杂神经系统疾病的疾病修饰因子。
Front Pharmacol. 2025 May 16;16:1577496. doi: 10.3389/fphar.2025.1577496. eCollection 2025.
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