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时间表达谱揭示了法医重要双翅目(麻蝇科)胚胎后发育过程中的潜在靶点。

Temporal Expression Profiles Reveal Potential Targets during Postembryonic Development of Forensically Important (Diptera: Sarcophagidae).

作者信息

Ren Lipin, Shang Yanjie, Zhang Xiangyan, Chen Shan, Zheng Yunna, Zou Ying, Qu Yihong, Cai Jifeng, Zhang Changquan, Guo Yadong

机构信息

Department of Forensic Science, School of Basic Medical Sciences, Central South University, Changsha 410013, China.

School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200000, China.

出版信息

Insects. 2022 May 12;13(5):453. doi: 10.3390/insects13050453.

Abstract

(Robineau-Desvoidy, 1830) is a species of medical and forensic importance. In order to investigate the molecular mechanism during postembryonic development and identify specific genes that may serve as potential targets, transcriptome analysis was used to investigate its gene expression dynamics from the larval to pupal stages, based on our previous -assembled genome of . Totals of 2457, 3656, 3764, and 2554 differentially expressed genes were identified. The specific genes encoding the structural constituent of cuticle were significantly differentially expressed, suggesting that degradation and synthesis of cuticle-related proteins might actively occur during metamorphosis. Molting (20-hydroxyecdysone, 20E) and juvenile (JH) hormone pathways were significantly enriched, and gene expression levels changed in a dynamic pattern during the developmental stages. In addition, the genes in the oxidative phosphorylation pathway were significantly expressed at a high level during the larval stage, and down-regulated from the wandering to pupal stages. Weighted gene co-expression correlation network analysis (WGCNA) further demonstrated the potential regulation mechanism of tyrosine metabolism in the process of puparium tanning. Moreover, 10 consistently up-regulated genes were further validated by qRT-PCR. The utility of the models was then examined in a blind study, indicating the ability to predict larval development. The developmental, stage-specific gene profiles suggest novel molecular markers for age prediction of forensically important flies.

摘要

(罗比诺 - 德沃伊迪,1830年)是一种具有医学和法医学重要性的物种。为了研究胚后发育过程中的分子机制并鉴定可能作为潜在靶点的特定基因,基于我们之前组装的该物种基因组,利用转录组分析来研究其从幼虫到蛹阶段的基因表达动态。共鉴定出2457、3656、3764和2554个差异表达基因。编码表皮结构成分的特定基因显著差异表达,这表明表皮相关蛋白的降解和合成可能在变态过程中活跃发生。蜕皮(20 - 羟基蜕皮酮,20E)和保幼(JH)激素途径显著富集,并且基因表达水平在发育阶段呈动态变化。此外,氧化磷酸化途径中的基因在幼虫阶段显著高表达,从预蛹期到蛹期则下调。加权基因共表达相关网络分析(WGCNA)进一步证明了蛹壳鞣化过程中酪氨酸代谢的潜在调控机制。此外,通过qRT - PCR进一步验证了10个持续上调的基因。然后在一项盲法研究中检验了这些模型的效用,表明其具有预测幼虫发育的能力。发育阶段特异性基因图谱为法医学重要蝇类的年龄预测提供了新的分子标记。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5aae/9143129/013c84d25bd6/insects-13-00453-g001.jpg

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