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微生物群落与混合塑料废物:泛基因组分析揭示了先前鉴定的 PET 降解菌对多种塑料类型进行降解的潜力。

Microbial Consortia and Mixed Plastic Waste: Pangenomic Analysis Reveals Potential for Degradation of Multiple Plastic Types via Previously Identified PET Degrading Bacteria.

机构信息

Biology Department, Reed College, Portland, OR 97202, USA.

Biology Department, Willamette University, Salem, OR 97301, USA.

出版信息

Int J Mol Sci. 2022 May 17;23(10):5612. doi: 10.3390/ijms23105612.

Abstract

The global utilization of single-use, non-biodegradable plastics, such as bottles made of polyethylene terephthalate (PET), has contributed to catastrophic levels of plastic pollution. Fortunately, microbial communities are adapting to assimilate plastic waste. Previously, our work showed a full consortium of five bacteria capable of synergistically degrading PET. Using omics approaches, we identified the key genes implicated in PET degradation within the consortium's pangenome and transcriptome. This analysis led to the discovery of a novel PETase, EstB, which has been observed to hydrolyze the oligomer BHET and the polymer PET. Besides the genes implicated in PET degradation, many other biodegradation genes were discovered. Over 200 plastic and plasticizer degradation-related genes were discovered through the Plastic Microbial Biodegradation Database (PMBD). Diverse carbon source utilization was observed by a microbial community-based assay, which, paired with an abundant number of plastic- and plasticizer-degrading enzymes, indicates a promising possibility for mixed plastic degradation. Using RNAseq differential analysis, several genes were predicted to be involved in PET degradation, including aldehyde dehydrogenases and several classes of hydrolases. Active transcription of PET monomer metabolism was also observed, including the generation of polyhydroxyalkanoate (PHA)/polyhydroxybutyrate (PHB) biopolymers. These results present an exciting opportunity for the bio-recycling of mixed plastic waste with upcycling potential.

摘要

全球范围内一次性使用的不可生物降解塑料的利用,如聚对苯二甲酸乙二醇酯 (PET) 制成的瓶子,导致了灾难性的塑料污染水平。幸运的是,微生物群落正在适应同化塑料废物。此前,我们的工作表明,有一个由五株细菌组成的完全共生体能够协同降解 PET。通过组学方法,我们在共生体的泛基因组和转录组中鉴定出与 PET 降解相关的关键基因。这项分析导致发现了一种新型的 PETase,EstB,它被观察到能够水解低聚物 BHET 和聚合物 PET。除了与 PET 降解相关的基因外,还发现了许多其他可生物降解的基因。通过塑料微生物生物降解数据库 (PMBD) 发现了超过 200 个与塑料和增塑剂降解相关的基因。通过基于微生物群落的测定观察到了多种碳源的利用,这与大量的塑料和增塑剂降解酶一起,表明混合塑料降解具有很大的可能性。通过 RNAseq 差异分析,预测了几个参与 PET 降解的基因,包括醛脱氢酶和几类水解酶。还观察到了 PET 单体代谢的转录活性,包括聚羟基烷酸 (PHA)/聚羟基丁酸酯 (PHB) 生物聚合物的生成。这些结果为混合塑料废物的生物回收提供了一个令人兴奋的机会,具有升级利用的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9e19/9146961/e03533576165/ijms-23-05612-g001.jpg

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