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利用硅藻系统生物学和合成生物学提高藻类生产力的研究进展

Recent Progress on Systems and Synthetic Biology of Diatoms for Improving Algal Productivity.

作者信息

Chen Jiwei, Huang Yifan, Shu Yuexuan, Hu Xiaoyue, Wu Di, Jiang Hangjin, Wang Kui, Liu Weihua, Fu Weiqi

机构信息

Department of Marine Science, Ocean College, Zhejiang University, Hangzhou, China.

Center for Data Science, Zhejiang University, Hangzhou, China.

出版信息

Front Bioeng Biotechnol. 2022 May 13;10:908804. doi: 10.3389/fbioe.2022.908804. eCollection 2022.

Abstract

Microalgae have drawn much attention for their potential applications as a sustainable source for developing bioactive compounds, functional foods, feeds, and biofuels. Diatoms, as one major group of microalgae with high yields and strong adaptability to the environment, have shown advantages in developing photosynthetic cell factories to produce value-added compounds, including heterologous bioactive products. However, the commercialization of diatoms has encountered several obstacles that limit the potential mass production, such as the limitation of algal productivity and low photosynthetic efficiency. In recent years, systems and synthetic biology have dramatically improved the efficiency of diatom cell factories. In this review, we discussed first the genome sequencing and genome-scale metabolic models (GEMs) of diatoms. Then, approaches to optimizing photosynthetic efficiency are introduced with a focus on the enhancement of biomass productivity in diatoms. We also reviewed genome engineering technologies, including CRISPR (clustered regularly interspaced short palindromic repeats) gene-editing to produce bioactive compounds in diatoms. Finally, we summarized the recent progress on the diatom cell factory for producing heterologous compounds through genome engineering to introduce foreign genes into host diatoms. This review also pinpointed the bottlenecks in algal engineering development and provided critical insights into the future direction of algal production.

摘要

微藻作为开发生物活性化合物、功能性食品、饲料和生物燃料的可持续来源,其潜在应用已备受关注。硅藻作为微藻的一个主要类群,具有高产和对环境适应性强的特点,在开发光合细胞工厂以生产增值化合物(包括异源生物活性产品)方面显示出优势。然而,硅藻的商业化面临一些限制其潜在大规模生产的障碍,如藻类生产力的限制和光合效率低下。近年来,系统生物学和合成生物学极大地提高了硅藻细胞工厂的效率。在这篇综述中,我们首先讨论了硅藻的基因组测序和基因组规模代谢模型(GEMs)。然后,介绍了优化光合效率的方法,重点是提高硅藻的生物质生产力。我们还综述了基因组工程技术,包括用于在硅藻中生产生物活性化合物的CRISPR(成簇规律间隔短回文重复序列)基因编辑。最后,我们总结了通过基因组工程将外源基因导入宿主硅藻以生产异源化合物的硅藻细胞工厂的最新进展。这篇综述还指出了藻类工程开发中的瓶颈,并为藻类生产的未来方向提供了关键见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5949/9136054/e1c18c1ae97d/fbioe-10-908804-g001.jpg

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