Université Paris-Saclay, Laboratoire Européen de Recherche pour la Polyarthrite rhumatoïde - Genhotel, Univ Evry, Evry, France.
Lifeware Group, Inria, Saclay-île de France, 91120 Palaiseau, France.
Brief Bioinform. 2022 Jul 18;23(4). doi: 10.1093/bib/bbac212.
Computational models are often employed in systems biology to study the dynamic behaviours of complex systems. With the rise in the number of computational models, finding ways to improve the reusability of these models and their ability to reproduce virtual experiments becomes critical. Correct and effective model annotation in community-supported and standardised formats is necessary for this improvement. Here, we present recent efforts toward a common framework for annotated, accessible, reproducible and interoperable computational models in biology, and discuss key challenges of the field.
计算模型通常被用于系统生物学领域,以研究复杂系统的动态行为。随着计算模型数量的增加,寻找提高这些模型的可重用性和重现虚拟实验能力的方法变得至关重要。在社区支持和标准化格式中进行正确和有效的模型注释是实现这一改进的必要条件。在这里,我们介绍了在生物学领域中实现注释、可访问、可重现和可互操作的计算模型的通用框架的最新进展,并讨论了该领域的关键挑战。