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解码非编码:工具与数据库揭示“垃圾”RNA的隐秘世界以进行创新治疗探索

Decoding the Non-coding: Tools and Databases Unveiling the Hidden World of "Junk" RNAs for Innovative Therapeutic Exploration.

作者信息

Chaudhary Uma, Banerjee Satarupa

机构信息

Department of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology (VIT), Vellore, Tamil Nadu 632014, India.

出版信息

ACS Pharmacol Transl Sci. 2024 Jun 7;7(7):1901-1915. doi: 10.1021/acsptsci.3c00388. eCollection 2024 Jul 12.

Abstract

Non-coding RNAs are pivotal regulators of gene and protein expression, exerting crucial influences on diverse biological processes. Their dysregulation is frequently implicated in the onset and progression of diseases, notably cancer. A profound comprehension of the intricate mechanisms governing ncRNAs is imperative for devising innovative therapeutic interventions against these debilitating conditions. Significantly, nearly 80% of our genome comprises ncRNAs, underscoring their centrality in cellular processes. The elucidation of ncRNA functions is pivotal for grasping the complexities of gene regulation and its implications for human health. Modern genome sequencing techniques yield vast datasets, stored in specialized databases. To harness this wealth of information and to understand the crosstalk of non-coding RNAs, knowledge of available databases is required, and many new sophisticated computational tools have emerged. These tools play a pivotal role in the identification, prediction, and annotation of ncRNAs, thereby facilitating their experimental validation. This Review succinctly outlines the current understanding of ncRNAs, emphasizing their involvement in disease development. It also highlights the databases and tools instrumental in classifying, annotating, and evaluating ncRNAs. By extracting meaningful biological insights from seemingly "junk" data, these tools empower scientists to unravel the intricate roles of ncRNAs in shaping human health.

摘要

非编码RNA是基因和蛋白质表达的关键调节因子,对多种生物学过程产生至关重要的影响。它们的失调常常与疾病(尤其是癌症)的发生和发展有关。深入理解调控非编码RNA的复杂机制对于设计针对这些使人衰弱的病症的创新治疗干预措施至关重要。值得注意的是,我们基因组中近80%由非编码RNA组成,这突出了它们在细胞过程中的核心地位。阐明非编码RNA的功能对于理解基因调控的复杂性及其对人类健康的影响至关重要。现代基因组测序技术产生了庞大的数据集,并存储在专门的数据库中。为了利用这些丰富信息并理解非编码RNA之间的相互作用,需要了解可用的数据库,并且已经出现了许多新的复杂计算工具。这些工具在非编码RNA的识别、预测和注释中起着关键作用,从而促进其实验验证。本综述简要概述了目前对非编码RNA的理解,强调了它们在疾病发展中的作用。它还突出了有助于对非编码RNA进行分类、注释和评估的数据库和工具。通过从看似“无用”的数据中提取有意义的生物学见解,这些工具使科学家能够揭示非编码RNA在塑造人类健康方面的复杂作用。

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