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转录组分析揭示IL-17信号介导的炎症在大鼠放射性食管损伤中的关键作用。

Transcriptome Profiling Unveils a Critical Role of IL-17 Signaling-Mediated Inflammation in Radiation-Induced Esophageal Injury in Rats.

作者信息

Yao Jia, Zhang Jinkang, Wang Jinlong, Lai Qian, Yuan Weijun, Liu Zhongyu, Cheng Shuanghua, Feng Yahui, Jiang Zhiqiang, Shi Yuhong, Jiang Sheng, Tu Wenling

机构信息

West China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, China.

Department of Nuclear Medicine, the Second Affiliated Hospital of Chengdu Medical College, China National Nuclear Corporation 416 Hospital, Chengdu, China.

出版信息

Dose Response. 2022 Jun 2;20(2):15593258221104609. doi: 10.1177/15593258221104609. eCollection 2022 Apr-Jun.

Abstract

Elucidation of the molecular mechanisms involving the initiation and progression of radiation-induced esophageal injury (RIEI) is important for prevention and treatment. Despite ongoing advances, the underlying mechanisms controlling RIEI remain largely unknown. In the present study, RNA-seq was performed to characterize mRNA profiles of the irradiated rat esophagus exposed to 0, 25, or 35 Gy irradiation. Bioinformatics analyses including dose-dependent differentially expressed genes (DEGs), Gene Ontology (GO), Kyoto Encyclopedia of Gene and Genome (KEGG) pathway, protein-protein interaction (PPI) network, and immune infiltration were performed. 134 DEGs were screened out with a dose-dependent manner (35 Gy > 25 Gy > control, or 35 Gy < 25 Gy < control). GO and KEGG analyses showed that the most significant mechanism was IL-17 signaling-mediated inflammatory response. 5 hub genes, Ccl11, Cxcl3, Il17a, S100a8, and S100a9, were identified through the intersection of the DEGs involved in inflammatory response, IL-17 pathway, and PPI network. Additionally, immune infiltration analysis showed the activation of macrophages, monocytes, T cells, NKT cells, and neutrophils, among which macrophages, monocytes, and neutrophils might be the main sources of S100a8 and S100a9. Thus, these findings further our understanding on the molecular biology of RIEI and may help develop more effective therapeutic strategies.

摘要

阐明辐射诱导的食管损伤(RIEI)起始和进展的分子机制对于预防和治疗至关重要。尽管不断取得进展,但控制RIEI的潜在机制在很大程度上仍不清楚。在本研究中,进行了RNA测序以表征暴露于0、25或35 Gy辐射的受辐照大鼠食管的mRNA谱。进行了生物信息学分析,包括剂量依赖性差异表达基因(DEG)、基因本体论(GO)、京都基因与基因组百科全书(KEGG)通路、蛋白质-蛋白质相互作用(PPI)网络和免疫浸润分析。以剂量依赖性方式筛选出134个DEG(35 Gy > 25 Gy > 对照,或35 Gy < 25 Gy < 对照)。GO和KEGG分析表明,最显著的机制是IL-17信号介导的炎症反应。通过参与炎症反应、IL-17通路和PPI网络的DEG的交集,鉴定出5个枢纽基因,即Ccl11、Cxcl3、Il17a、S100a8和S100a9。此外,免疫浸润分析显示巨噬细胞、单核细胞、T细胞、NKT细胞和中性粒细胞被激活,其中巨噬细胞、单核细胞和中性粒细胞可能是S100a8和S100a9的主要来源。因此,这些发现进一步加深了我们对RIEI分子生物学的理解,并可能有助于制定更有效的治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb7c/9168911/7b30f3fd9961/10.1177_15593258221104609-fig1.jpg

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