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一种传播碳青霉烯酶基因的高风险克隆的出现。

Emergence of a High-Risk Clone Disseminating Carbapenemase Genes.

作者信息

Prah Isaac, Nukui Yoko, Yamaoka Shoji, Saito Ryoichi

机构信息

Department of Molecular Microbiology, Graduate School of Medicine and Dental Science, Tokyo Medical and Dental University, Tokyo, Japan.

Department of Molecular Virology, Graduate School of Medicine and Dental Science, Tokyo Medical and Dental University, Tokyo, Japan.

出版信息

Front Microbiol. 2022 May 23;13:880248. doi: 10.3389/fmicb.2022.880248. eCollection 2022.

Abstract

is emerging as an important human pathogen of concern especially strains with plasmid-mediated carbapenemase genes. The IncX3- plasmid has been described as the primary vector for dissemination. However, whether strains with this plasmid have any competitive edge remain largely unexplored. We characterized a -producing strain (KO_408) from Japan and sought to understand the driving force behind the recent dissemination of IncX3-a plasmids in different bacterial hosts. Antibiotic susceptibility testing, conjugation, and whole-genome sequencing were performed for KO_408, a clinical isolate recovered from a respiratory culture. Fitness, stability, and competitive assays were performed using the IncX3- plasmid, pKO_4-NDM-5. KO_408 was ascribed to a novel sequence type, ST256, and harbored resistance genes conforming to its MDR phenotype. The gene was localized on the ~44.9 kb IncX3 plasmid (pKO_4-NDM-5), which was transferable in the conjugal assay. The acquisition of pKO_4-NDM-5 did not impose any fitness burden and showed high stability in the host cells. However, transformants with pKO_4-NDM-5 were outcompeted by their host cells and transconjugants with the IncX3- plasmid. The genetic environment of in pKO_4-NDM-5 has been previously described. pKO_4-NDM-5 showed a close phylogenetic distance with seven similar plasmids from China. KO_408 clustered with strains within the KoI phylogroup, which is closely associated with carbapenemase genes. This study highlights the emergence of a high-risk clone harboring carbapenemase genes and affirms that the recent spread of IncX3- plasmids might be due to their low fitness cost and stability but not their competitive prowess.

摘要

正成为一种令人关注的重要人类病原体,尤其是带有质粒介导碳青霉烯酶基因的菌株。IncX3质粒已被描述为传播的主要载体。然而,携带这种质粒的菌株是否具有任何竞争优势在很大程度上仍未得到探索。我们对一株来自日本的产[具体物质]菌株(KO_408)进行了特征分析,并试图了解IncX3-a质粒最近在不同细菌宿主中传播背后的驱动力。对从呼吸道培养物中分离出的临床菌株KO_408进行了抗生素敏感性测试、接合试验和全基因组测序。使用IncX3-质粒pKO_4-NDM-5进行了适应性、稳定性和竞争试验。KO_408被归为一种新型序列类型ST256,并携带与其多重耐药表型相符的抗性基因。[具体基因]位于约44.9 kb的IncX3质粒(pKO_4-NDM-5)上,该质粒在接合试验中可转移。获得pKO_4-NDM-5并未带来任何适应性负担,并且在宿主细胞中表现出高稳定性。然而,携带pKO_4-NDM-5的转化体被其宿主细胞和携带IncX3-质粒的接合子竞争淘汰。pKO_4-NDM-5中[具体基因]的遗传环境此前已有描述。pKO_4-NDM-5与来自中国的七个相似质粒显示出密切的系统发育距离。KO_408与KoI系统发育群内的菌株聚集在一起,该系统发育群与碳青霉烯酶基因密切相关。这项研究突出了携带碳青霉烯酶基因的高风险[具体克隆]的出现,并确认IncX3-质粒最近的传播可能是由于其低适应性成本和稳定性,而非其竞争能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/59a0/9169563/82cd0956dcb7/fmicb-13-880248-g001.jpg

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