Key Laboratory of Biology and Genetics Improvement of Oil Crops, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China.
Int J Mol Sci. 2022 Jun 3;23(11):6265. doi: 10.3390/ijms23116265.
E3 ligases promote protein ubiquitination and degradation, which regulate every aspect of eukaryotic life. The Ariadne (ARI) proteins of RBR (ring between ring fingers) protein subfamily has been discovered as a group of potential E3 ubiquitin ligases. Only a few available research studies show their role in plant adaptations processes against the external environment. Presently, the functions of ARI proteins are largely unknown in plants. Therefore, in this study, we performed genome-wide analysis to identify the gene family and explore their potential importance in . A total of 39 genes were identified in the genome and were classified into three subfamilies (A, B and C) based on phylogenetic analysis. The protein-protein interaction networks and enrichment analysis indicated that genes could be involved in endoreduplication, DNA repair, proteasome assembly, ubiquitination, protein kinase activity and stress adaptation. The transcriptome data analysis in various tissues provided us an indication of some genes' functional importance in tissue development. We also identified potential genes that were significantly responsive towards the abiotic stresses. Furthermore, eight genes were identified as candidate genes for multiple agronomic traits through association mapping analysis in ; among them, , which is the ortholog of , was significantly associated with ten agronomic traits. This study provided useful information on genes, which could aid targeted functional research and genetic improvement for breeding in .
E3 连接酶促进蛋白质泛素化和降解,从而调节真核生物生活的各个方面。RBR(环指之间的环)蛋白亚家族的 Ariadne(ARI)蛋白已被发现为一组潜在的 E3 泛素连接酶。只有少数可用的研究表明它们在植物适应外部环境的过程中的作用。目前,ARI 蛋白在植物中的功能在很大程度上是未知的。因此,在这项研究中,我们进行了全基因组分析,以鉴定基因家族,并探讨它们在中的潜在重要性。在基因组中鉴定出了 39 个基因,并根据系统发育分析将其分为三个亚家族(A、B 和 C)。蛋白质-蛋白质相互作用网络和富集分析表明,基因可能参与内复制、DNA 修复、蛋白酶体组装、泛素化、蛋白激酶活性和应激适应。在各种组织中的转录组数据分析为我们提供了一些基因在组织发育中的功能重要性的指示。我们还鉴定了一些潜在的基因,它们对非生物胁迫有显著的响应。此外,通过在中的关联图谱分析,鉴定了 8 个候选基因与多个农艺性状显著相关;其中,是 的同源基因,与 10 个农艺性状显著相关。这项研究为基因提供了有用的信息,这可能有助于有针对性的功能研究和遗传改良,以进行育种。