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基于生物信息学的 : 拟南芥肌动蛋白基因家族全基因组分析及其对农艺性状的影响

Genome-Wide Profiling of the ACTIN Gene Family and Its Implications for Agronomic Traits in : A Bioinformatics Study.

机构信息

College of Life Science and Technology, Wuhan Polytechnic University, Wuhan 430023, China.

Horticultural Crop Biology and Germplasm Enhancement, College of Horticulture, South China Agricultural University, Guangzhou 510642, China.

出版信息

Int J Mol Sci. 2024 Oct 6;25(19):10752. doi: 10.3390/ijms251910752.

Abstract

ACTINs are key structural proteins in plants, which form the actin cytoskeleton and are engaged in numerous routine cellular processes. Meanwhile, , recognized as a housekeeping gene, has not yet been thoroughly investigated in . The current research has led to the detection of 69 actin genes in , which were organized into six distinct subfamilies on the basis of phylogenetic relationships. Functional enrichment analysis, along with the construction of protein interaction networks, suggested that s play roles in Preserving cell morphology and facilitating cytoplasmic movement, plant development, and adaptive responses to environmental stress. Moreover, the genes presented a wide range of expression levels among different tissues, whereas the majority experienced a substantial increase in expression when subjected to various abiotic stresses, demonstrating a pronounced sensitivity to abiotic factors. Furthermore, association mapping analysis indicated that some s potentially affected certain key agronomic traits. Overall, our research deepens the knowledge of genes, promotes the cultivation of improved strains, and lays the groundwork for subsequent functional research.

摘要

肌动蛋白是植物中的关键结构蛋白,它们形成肌动蛋白细胞骨架,并参与众多常规的细胞过程。同时,作为管家基因,在 中尚未得到彻底研究。目前的研究在 中检测到 69 个肌动蛋白基因,根据系统发育关系将它们组织成六个不同的亚家族。功能富集分析以及蛋白质相互作用网络的构建表明, 参与维持细胞形态和促进细胞质运动、植物发育以及对环境胁迫的适应性反应。此外, 基因在不同组织中的表达水平差异很大,而大多数基因在受到各种非生物胁迫时表达水平显著增加,表现出对非生物因素的显著敏感性。此外,关联图谱分析表明,一些 可能影响某些关键的农艺性状。总的来说,我们的研究加深了对 基因的认识,促进了改良 菌株的培育,并为后续的功能研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b7ae/11476578/922ef609ef15/ijms-25-10752-g001.jpg

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