College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
Key Laboratory of Biology and Genetics Improvement of Oil Crops, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences, Ministry of Agriculture and Rural Affairs, Wuhan 430062, China.
Genes (Basel). 2023 Jul 10;14(7):1421. doi: 10.3390/genes14071421.
SRS (SHI-related sequence) transcription factors play a crucial role in plant growth, development, and abiotic stress response. Although ( is one of the most important oil crops in the world, the role of genes in () has not been well investigated. Therefore, we employed a bioinformatics approach to identify genes from genomic data and investigated their characteristics, functions, and expression patterns, to gain a better understanding of how this gene family is involved in plant development and growth. The results revealed that there were 34 gene family members in the genomic sequence of , unevenly distributed throughout the sequence. Based on the phylogenetic analysis, these genes could be divided into four subgroups, with each group sharing comparable conserved motifs and gene structure. Analysis of the upstream promoter region showed that genes may regulate hormone responses, biotic and abiotic stress response, growth, and development in . The protein-protein interaction analysis revealed the involvement of genes in various biological processes and metabolic pathways. Our analysis of gene expression showed that 23 genes in the callus tissue exhibited a dominant expression pattern, suggesting their critical involvement in cell dedifferentiation, cell division, and tissue development. In addition, association analysis between genotype and agronomic traits revealed that genes may be linked to some important agronomic traits in , suggesting that genes were widely involved in the regulation of important agronomic traits (including C16.0, C18.0, C18.1, C18.2 C18.3, C20.1, C22.1, GLU, protein, TSW, and FFT). In this study, we predicted the evolutionary relationships and potential functions of gene family members, providing a basis for the development of gene functions which could facilitate targeted functional studies and genetic improvement for elite breeding in .
SRS(Shi 相关序列)转录因子在植物生长、发育和非生物胁迫响应中发挥着关键作用。尽管 ( )是世界上最重要的油料作物之一,但 ( )基因在 ( )中的作用尚未得到充分研究。因此,我们采用生物信息学方法从基因组数据中鉴定 ( )基因,并研究其特征、功能和表达模式,以更好地了解该基因家族如何参与植物发育和生长。结果表明,在 ( )基因组序列中存在 34 个 基因家族成员,不均匀地分布在整个序列中。基于系统发育分析,这些基因可以分为四个亚组,每个亚组具有相似的保守基序和基因结构。对上游启动子区的分析表明, ( )基因可能调节激素反应、生物和非生物胁迫响应、生长和发育。蛋白质-蛋白质相互作用分析表明, ( )基因参与了各种生物过程和代谢途径。我们对 ( )基因表达的分析表明,在愈伤组织中 23 个基因表现出主导表达模式,表明它们在细胞去分化、细胞分裂和组织发育中具有关键作用。此外,基因型与农艺性状的关联分析表明, ( )基因可能与 ( )中的一些重要农艺性状相关,表明 ( )基因广泛参与重要农艺性状(包括 C16.0、C18.0、C18.1、C18.2 C18.3、C20.1、C22.1、GLU、protein、TSW 和 FFT)的调控。在本研究中,我们预测了 ( )基因家族成员的进化关系和潜在功能,为 ( )基因功能的开发提供了基础,这将有助于有针对性的功能研究和遗传改良,以培育 ( )中的优良品种。