Department of Marine and Environmental Sciences, Northeastern University, Nahant, MA, USA.
Department of Computational Biology, Cornell University, Ithaca, NY, USA.
Philos Trans R Soc Lond B Biol Sci. 2022 Aug;377(1856):20210200. doi: 10.1098/rstb.2021.0200. Epub 2022 Jun 13.
Across many species where inversions have been implicated in local adaptation, genomes often evolve to contain multiple, large inversions that arise early in divergence. Why this occurs has yet to be resolved. To address this gap, we built forward-time simulations in which inversions have flexible characteristics and can invade a metapopulation undergoing spatially divergent selection for a highly polygenic trait. In our simulations, inversions typically arose early in divergence, captured standing genetic variation upon mutation, and then accumulated many small-effect loci over time. Under special conditions, inversions could also arise late in adaptation and capture locally adapted alleles. Polygenic inversions behaved similarly to a single supergene of large effect and were detectable by genome scans. Our results show that characteristics of adaptive inversions found in empirical studies (e.g. multiple large, old inversions that are outliers, sometimes overlapping with other inversions) are consistent with a highly polygenic architecture, and inversions do not need to contain any large-effect genes to play an important role in local adaptation. By combining a population and quantitative genetic framework, our results give a deeper understanding of the specific conditions needed for inversions to be involved in adaptation when the genetic architecture is polygenic. This article is part of the theme issue 'Genomic architecture of supergenes: causes and evolutionary consequences'.
在许多种涉及倒位与局部适应的物种中,基因组通常进化出多个大型倒位,这些倒位在分化早期就出现了。至于为什么会出现这种情况,目前仍未得到解决。为了解决这一差距,我们进行了正向时间模拟,其中倒位具有灵活的特征,可以侵入经历空间分歧选择的多群体,以适应高度多基因性状。在我们的模拟中,倒位通常在分化早期出现,在突变时捕获了固定的遗传变异,然后随着时间的推移积累了许多小效应的位点。在特殊条件下,倒位也可能在适应后期出现,并捕获局部适应的等位基因。多基因倒位的行为类似于一个具有大效应的单一超级基因,并且可以通过基因组扫描来检测。我们的结果表明,在实证研究中发现的适应性倒位的特征(例如,多个大型、古老的倒位是异常值,有时与其他倒位重叠)与高度多基因结构一致,而且倒位不需要包含任何大效应基因就能在局部适应中发挥重要作用。通过结合群体和数量遗传学框架,我们的结果更深入地了解了在遗传结构为多基因时,倒位参与适应所需的具体条件。本文是主题为“超级基因的基因组结构:原因和进化后果”的一部分。