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鉴定 sp. nov.、sp. nov. 和 sp. nov.,并修订属名 。

Identification of sp. nov., sp. nov. and sp. nov. and emended description of the genus .

机构信息

Department of Life Science, Dongguk University-Seoul, Goyang 10326, South Korea.

出版信息

Int J Syst Evol Microbiol. 2022 Jun;72(6). doi: 10.1099/ijsem.0.005431.

Abstract

Three chitinolytic, Gram-negative, light pink, capsule-forming, rod-shaped bacterial strains with gliding motion (MYSH2, MJ1a and dk17) were isolated from seashells, soil and foxtail, respectively. Phylogenetic analysis of the 16S rRNA gene sequences and concatenated alignment of 92 core genes indicated that strains MYSH2, MJ1a and dk17 were novel species of the genus and exhibited a high 16S rRNA sequence similarity (i.e. more than 97.2 %) among each other. These novel strains contained summed feature 3 (C ω7 and/or C ω6), iso-C and MK-7 as the predominant fatty acids and menaquinone. According to the CAZys coding gene of KAAS, MYSH2 and MJ1a were interpreted as strains containing both GH18 and 19 family coding genes, except for dk17, which shows only GH19 family genes. These strains likely degrade chitin to chitobiose or directly to -acetyl-d-glucosamine, which may enhance their chitinolytic capacity, thus making these stains potentially useful for industrial chitin degradation. Based on distinct morphological, physiological, chemotaxonomic and phylogenetic differences from their closest phylogenetic neighbours, we propose that strains MYSH2, MJ1a and dk17 represent three novel species in the genus , for which the names sp. nov. (=KACC 19716=JCM 32787), sp. nov. (=KACC 19906=NBRC 113667) and sp. nov. (=KACC 19907=NBRC 113666) are proposed. An emended description of the genus is proposed.

摘要

从贝壳、土壤和黍米中分别分离到 3 株具有滑行运动能力的、产粘胶囊的革兰氏阴性、亮粉色、杆状的几丁质分解菌(MYSH2、MJ1a 和 dk17)。16S rRNA 基因序列的系统发育分析和 92 个核心基因的串联比对表明,菌株 MYSH2、MJ1a 和 dk17 是属的新种,彼此之间具有很高的 16S rRNA 序列相似性(即超过 97.2%)。这些新菌株含有特征脂肪酸总和 3(C ω7 和/或 C ω6)、iso-C 和 MK-7,以及menaquinone。根据 KAAS 的 CAZys 编码基因,MYSH2 和 MJ1a 被解释为同时含有 GH18 和 19 家族编码基因的菌株,而 dk17 仅显示 GH19 家族基因。这些菌株可能将几丁质降解为壳二糖或直接降解为乙酰-d-葡萄糖胺,这可能增强了它们的几丁质分解能力,从而使这些菌株在工业几丁质降解方面具有潜在用途。基于与最接近的系统发育近邻之间的明显形态、生理、化学分类和系统发育差异,我们建议菌株 MYSH2、MJ1a 和 dk17 代表属中的三个新种,其名称分别为 sp. nov.(=KACC 19716=JCM 32787)、 sp. nov.(=KACC 19906=NBRC 113667)和 sp. nov.(=KACC 19907=NBRC 113666)。对属的修订描述也被提出。

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