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用于结构功能研究的双功能且进化上有差异的B3金属β-内酰胺酶BLEG-1的过表达、纯化及结晶过程

Procedure of the overexpression, purification and crystallization of BLEG-1, a bifunctional and evolutionary divergent B3 metallo-β-lactamase, for structure-function studies.

作者信息

Au Shaw Xian, Noor Noor Dina Muhd, Matsumura Hiroyoshi, Rahman Raja Noor Zaliha Raja Abdul, Normi Yahaya M

机构信息

Enzyme and Microbial Technology (EMTech) Research Center, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor 43400, Malaysia.

Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang, Selangor 43400, Malaysia.

出版信息

MethodsX. 2022 May 27;9:101740. doi: 10.1016/j.mex.2022.101740. eCollection 2022.

Abstract

Metallo-β-lactamases (MBLs) are class B β-lactamases from the metallo-hydrolase-like MBL-fold superfamily which act on a broad range of β-lactam antibiotics, thus conferring antibiotics resistance to bacterial pathogens. The attempt to structurally characterize BLEG-1, an evolutionary divergent B3 metallo-β-lactamase (MBL) with dual activity from G1, led to the optimization of its purification, post-purification and crystallization processes for X-ray diffraction purpose. The workflow, conditions used and dataset obtained from each stage of the processes are presented herein. The optimization workflow has enabled the obtainment of purified, active BLEG-1 in high yield for its activity assays, crystallization and structure determination via X-ray diffraction. This is the first step to gain a better insight into its dual activity and evolutionary divergence from a structural perspective. The complete research article, including BLEG-1 dual activity analysis, is published in the International Journal of Molecular Sciences (Au et al., 2021). • The method was optimized to increase the stability of BLEG-1 in purification, post-purification and crystallization processes. • Protein crystallization using the optimized conditions presented herein is able to produce and regenerate BLEG-1 protein crystals of medium-size, which is an advantage in X-ray diffraction. • The method can be used for relevant homologs and variants of BLEG-1 for structure-function and mechanistic studies of such proteins.

摘要

金属β-内酰胺酶(MBLs)是来自金属水解酶样MBL折叠超家族的B类β-内酰胺酶,作用于多种β-内酰胺抗生素,从而使细菌病原体产生抗生素抗性。为了从结构上表征BLEG-1(一种来自G1的具有双重活性的进化上不同的B3金属β-内酰胺酶),对其纯化、纯化后处理及结晶过程进行了优化,以用于X射线衍射。本文介绍了该过程各阶段所使用的工作流程、条件及获得的数据集。优化后的工作流程能够以高产率获得纯化的、有活性的BLEG-1,用于其活性测定、结晶及通过X射线衍射确定结构。这是从结构角度更好地了解其双重活性和进化差异的第一步。完整的研究文章,包括BLEG-1双重活性分析,发表在《国际分子科学杂志》上(Au等人,2021年)。• 该方法经过优化,以提高BLEG-1在纯化、纯化后处理及结晶过程中的稳定性。• 使用本文介绍的优化条件进行蛋白质结晶,能够产生并再生中等大小的BLEG-1蛋白质晶体,这在X射线衍射中具有优势。• 该方法可用于BLEG-1的相关同源物和变体,以进行此类蛋白质的结构-功能及作用机制研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdb5/9189199/c3b82bd02e07/ga1.jpg

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